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AT1G01010.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : NAC domain containing protein 1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NAC domain containing protein 1 (NAC001); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 69 (TAIR:AT4G01550.1); Has 2503 Blast hits to 2496 proteins in 69 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2502; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
BioGrid:24815eggNOG:ENOG410JUFXeggNOG:ENOG41106X5EMBL:AC007323EMBL:AF439834EMBL:AK226863EMBL:BT001115
EMBL:CP002684EnsemblPlants:AT1G01010EnsemblPlants:AT1G01010.1entrez:839580GeneID:839580Genevisible:Q0WV96GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0016021Gramene:AT1G01010.1hmmpanther:PTHR31989hmmpanther:PTHR31989:SF5
HOGENOM:HOG000113720InParanoid:Q0WV96IntAct:Q0WV96InterPro:IPR003441KEGG:ath:AT1G01010OMA:PYENESEPaxDb:Q0WV96
Pfam:PF02365Pfam:Q0WV96Pfscan:PS51005PhylomeDB:Q0WV96PIR:A86141PRIDE:Q0WV96PRO:PR:Q0WV96
PROSITE:PS51005ProteinModelPortal:Q0WV96Proteomes:UP000006548RefSeq:NP_171609.1SMR:Q0WV96STRING:3702.AT1G01010.1SUPFAM:SSF101941
TAIR:AT1G01010tair10-symbols:ANAC001tair10-symbols:NAC001TMHMM:TMhelixUniGene:At.26626UniProt:Q0WV96
Coordinates (TAIR10) chr1:+:3760..5630
Molecular Weight (calculated) 49428.40 Da
IEP (calculated) 4.89
GRAVY (calculated) -0.73
Length 429 amino acids
Sequence (TAIR10)
(BLAST)
001: MEDQVGFGFR PNDEELVGHY LRNKIEGNTS RDVEVAISEV NICSYDPWNL RFQSKYKSRD AMWYFFSRRE NNKGNRQSRT TVSGKWKLTG ESVEVKDQWG
101: FCSEGFRGKI GHKRVLVFLD GRYPDKTKSD WVIHEFHYDL LPEHQRTYVI CRLEYKGDDA DILSAYAIDP TPAFVPNMTS SAGSVVNQSR QRNSGSYNTY
201: SEYDSANHGQ QFNENSNIMQ QQPLQGSFNP LLEYDFANHG GQWLSDYIDL QQQVPYLAPY ENESEMIWKH VIEENFEFLV DERTSMQQHY SDHRPKKPVS
301: GVLPDDSSDT ETGSMIFEDT SSSTDSVGSS DEPGHTRIDD IPSLNIIEPL HNYKAQEQPK QQSKEKVISS QKSECEWKMA EDSIKIPPST NTVKQSWIVL
401: ENAQWNYLKN MIIGVLLFIS VISWIILVG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)