AT5G67170.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SEC-C motif-containing protein / OTU-like cysteine protease family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
SEC-C motif-containing protein / OTU-like cysteine protease family protein; CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323), SEC-C motif (InterPro:IPR004027); BEST Arabidopsis thaliana protein match is: OTU-like cysteine protease family protein (TAIR:AT2G27350.6); Has 2803 Blast hits to 2797 proteins in 825 species: Archae - 0; Bacteria - 1391; Metazoa - 518; Fungi - 199; Plants - 312; Viruses - 14; Other Eukaryotes - 369 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:26799851..26801763 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 41535.70 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.51 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.77 | ||||||||||||||||||||||||||||||||||||
| Length | 375 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAKTKQQKSK PKKQPHQKQG KDCDLSQFRA QLDALGLKII QVTADGNCFF RAIADQLEGN EDEHNKYRNM IVLYIVKNRE MFEPFIEDDV PFEDYCKTMD 101: DDGTWAGNME LQAASLVTRS NICIHRNMSP RWYIRNFEDT RTRMIHLSYH DGEHYNSVRS KEDACGGPAR PVVIEADAKV SAASKQAKAT ESKSKNKADK 201: CHVNAGAIKV VMSGSCCDNT EKAEQVLLQV NGDVDAAIEF LIADQGMESL TENDTETASA SDTINPKHAS DSPMENTEQA REELIEEESA SGNNSETVQA 301: KCTTQTDDKK IPRNKTCPCG SKKKYKSCCG TATGRSSVKL LVSQTMESKK GRKNLRRGTS NEVEANAPDV GALCI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)