AT5G66900.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.945 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Disease resistance protein (CC-NBS-LRR class) family | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Disease resistance protein (CC-NBS-LRR class) family; FUNCTIONS IN: ATP binding; INVOLVED IN: apoptosis, defense response; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Powdery mildew resistance protein, RPW8 domain (InterPro:IPR008808), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT5G66910.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:26714931..26717757 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 92250.10 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.30 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.14 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 809 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNDWASLGIG SIGEAVFSKL LKVVIDEAKK FKAFKPLSKD LVSTMEILFP LTQKIDSMQK ELDFGVKELK ELRDTIERAD VAVRKFPRVK WYEKSKYTRK 101: IERINKDMLK FCQIDLQLLQ HRNQLTLLGL TGNLVNSVDG LSKRMDLLSV PAPVFRDLCS VPKLDKVIVG LDWPLGELKK RLLDDSVVTL VVSAPPGCGK 201: TTLVSRLCDD PDIKGKFKHI FFNVVSNTPN FRVIVQNLLQ HNGYNALTFE NDSQAEVGLR KLLEELKENG PILLVLDDVW RGADSFLQKF QIKLPNYKIL 301: VTSRFDFPSF DSNYRLKPLE DDDARALLIH WASRPCNTSP DEYEDLLQKI LKRCNGFPIV IEVVGVSLKG RSLNTWKGQV ESWSEGEKIL GKPYPTVLEC 401: LQPSFDALDP NLKECFLDMG SFLEDQKIRA SVIIDMWVEL YGKGSSILYM YLEDLASQNL LKLVPLGTNE HEDGFYNDFL VTQHDILREL AICQSEFKEN 501: LERKRLNLEI LENTFPDWCL NTINASLLSI STDDLFSSKW LEMDCPNVEA LVLNLSSSDY ALPSFISGMK KLKVLTITNH GFYPARLSNF SCLSSLPNLK 601: RIRLEKVSIT LLDIPQLQLS SLKKLSLVMC SFGEVFYDTE DIVVSNALSK LQEIDIDYCY DLDELPYWIS EIVSLKTLSI TNCNKLSQLP EAIGNLSRLE 701: VLRLCSSMNL SELPEATEGL SNLRFLDISH CLGLRKLPQE IGKLQNLKKI SMRKCSGCEL PESVTNLENL EVKCDEETGL LWERLKPKMR NLRVQEEEIE 801: HNLNLLQMF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)