AT5G65690.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.983 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : phosphoenolpyruvate carboxykinase 2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a putative phosphoenolpyruvate carboxykinase (ATP-dependent). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
phosphoenolpyruvate carboxykinase 2 (PCK2); FUNCTIONS IN: phosphoenolpyruvate carboxykinase activity, purine nucleotide binding, phosphoenolpyruvate carboxykinase (ATP) activity, ATP binding; INVOLVED IN: gluconeogenesis; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, male gametophyte, root, flower, trichome; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Phosphoenolpyruvate carboxykinase, N-terminal (InterPro:IPR008210), Phosphoenolpyruvate carboxykinase (ATP), conserved site (InterPro:IPR015994), Phosphoenolpyruvate carboxykinase, ATP-utilising (InterPro:IPR001272), Phosphoenolpyruvate carboxykinase, C-terminal (InterPro:IPR013035); BEST Arabidopsis thaliana protein match is: phosphoenolpyruvate carboxykinase 1 (TAIR:AT4G37870.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:26266477..26269486 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 72895.40 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.37 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.29 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 670 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAGNGNESTG GDFSFSAAAA RDALPRITTE KGGKSPGPAD VCQDDIAPRV NFQTIDELHS LQKKRSAPTT PLRDGSASGV SGTSGPTTPV SSETMLQSVS 101: ASLASLTRET GPKLIRGDPT SAAKVAHVPV TPTSLPAADV SDSGLKFTHI LHNLSPAELY EQAIKFEKGS FVTSTGALAT LSGAKTGRSP KDKRVVKDDT 201: TEAELWWGKG SPNIEMDEKT FLVNRERAVD YLNSLDKVFV NDQYLNWDPE NKIKVRIVSA RAYHSLFMHN MCIRPTPEEL ENFGTPDFTI YNAGKFPCNR 301: FTHYMTSSTS VDINLGRREM VILGTQYAGE MKKGLFGVMH YLMPKRKILS LHSGCNMGKD GDVALFFGLS GTGKTTLSTD HNRYLIGDDE HCWSEAGVSN 401: IEGGCYAKCI DLARDKEPDI WNAIKFGTVL ENVVFDEHTR EVDYTDKSVT ENTRAAYPIE YIPNSKIPCV GPHPKNVILL ACDAFGVLPP ISKLNLAQTM 501: YHFISGYTAL VAGTEEGVKE PRATFSACFG AAFIMLHPTK YAAMLAEKMQ AQGATGWLVN TGWSGGSYGT GSRIKLAYTR KIIDAIHSGS LLNASYRKTD 601: IFGLEIPNEV EGVPSEILEP INAWPDKMAY EDTLLKLAGL FKSNFETFTS HKIGDDGKLT EEILAAGPNF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)