AT5G62370.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G65560.1); Has 62242 Blast hits to 13624 proteins in 288 species: Archae - 4; Bacteria - 32; Metazoa - 555; Fungi - 723; Plants - 59384; Viruses - 0; Other Eukaryotes - 1544 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:25041901..25044849 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 110274.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.64 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.06 | ||||||||||||||||||||||||||||||||||||||||
| Length | 982 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLKAKALCYR FFKSRKATTC ALSSELFPST SAAVFSAASG DHRSRCLSLI VKLGRRGLLD SAREVIRRVI DGSSSISEAA LVADFAVDNG IELDSSCYGA 101: LIRKLTEMGQ PGVAETFYNQ RVIGNGIVPD SSVLDSMVFC LVKLRRFDEA RAHLDRIIAS GYAPSRNSSS LVVDELCNQD RFLEAFHCFE QVKERGSGLW 201: LWCCKRLFKG LCGHGHLNEA IGMLDTLCGM TRMPLPVNLY KSLFYCFCKR GCAAEAEALF DHMEVDGYYV DKVMYTCLMK EYCKDNNMTM AMRLYLRMVE 301: RSFELDPCIF NTLIHGFMKL GMLDKGRVMF SQMIKKGVQS NVFTYHIMIG SYCKEGNVDY ALRLFVNNTG SEDISRNVHC YTNLIFGFYK KGGMDKAVDL 401: LMRMLDNGIV PDHITYFVLL KMLPKCHELK YAMVILQSIL DNGCGINPPV IDDLGNIEVK VESLLGEIAR KDANLAAVGL AVVTTALCSQ RNYIAALSRI 501: EKMVNLGCTP LPFSYNSVIK CLFQENIIED LASLVNIIQE LDFVPDVDTY LIVVNELCKK NDRDAAFAII DAMEELGLRP TVAIYSSIIG SLGKQGRVVE 601: AEETFAKMLE SGIQPDEIAY MIMINTYARN GRIDEANELV EEVVKHFLRP SSFTYTVLIS GFVKMGMMEK GCQYLDKMLE DGLSPNVVLY TALIGHFLKK 701: GDFKFSFTLF GLMGENDIKH DHIAYITLLS GLWRAMARKK KRQVIVEPGK EKLLQRLIRT KPLVSIPSSL GNYGSKSFAM EVIGKVKKSI IPNLYLHNTI 801: ITGYCAAGRL DEAYNHLESM QKEGIVPNLV TYTILMKSHI EAGDIESAID LFEGTNCEPD QVMYSTLLKG LCDFKRPLDA LALMLEMQKS GINPNKDSYE 901: KLLQCLCYSR LTMEAVKVVK DMAALDIWPR SINHTWLIYI LCEEKKLREA RALFAIMVQS GRSLLNCTKP GLLKMLNQNQ QL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)