AT5G59770.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.427 endoplasmic reticulum 0.270 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein-tyrosine phosphatase-like, PTPLA | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein-tyrosine phosphatase-like, PTPLA; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase-like, PTPLA (InterPro:IPR007482); BEST Arabidopsis thaliana protein match is: Protein-tyrosine phosphatase-like, PTPLA (TAIR:AT5G10480.2); Has 698 Blast hits to 698 proteins in 198 species: Archae - 0; Bacteria - 0; Metazoa - 336; Fungi - 172; Plants - 117; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:24079521..24081195 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 30962.60 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 10.03 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.44 | ||||||||||||||||||||||||||||
| Length | 272 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MATQSCYVTR NLKSAVKNAI QTKQPPTTTR AAVDPDSLTV DVAVCEVLSL QLQFSPSFCM VHQICVVVLR RAISLLIILN SFLSNKTIIS AYASAGFLIS 101: LFQTAAILEV LHGAIGIVPS GFLSPLMQWS GRTHFILAIV GQIKEVQDSP WLSITLVAWC IGEMIRYPHY AFTCLGRCPY WLTYLRYTGF IVIYPTGLVG 201: ELLIMYKALP YVKERNLYAN FFSVFPFSYY DFLWAVLLVY PFLWLKLYLQ LFKQRKSKLG KSKKLHGKRK RM |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)