AT5G58160.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.988 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : actin binding | ||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
actin binding; FUNCTIONS IN: actin binding; INVOLVED IN: cellular component organization, actin cytoskeleton organization; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Actin-binding FH2/DRF autoregulatory (InterPro:IPR003104), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Actin-binding FH2 (InterPro:IPR015425), Tensin phosphatase, C2 domain (InterPro:IPR014020); BEST Arabidopsis thaliana protein match is: Actin-binding FH2 (Formin Homology) protein (TAIR:AT2G25050.1); Has 66030 Blast hits to 44960 proteins in 1807 species: Archae - 80; Bacteria - 11670; Metazoa - 27723; Fungi - 9802; Plants - 6854; Viruses - 1874; Other Eukaryotes - 8027 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:23533724..23539465 | ||||||||||||
| Molecular Weight (calculated) | 146477.00 Da | ||||||||||||
| IEP (calculated) | 7.06 | ||||||||||||
| GRAVY (calculated) | -0.39 | ||||||||||||
| Length | 1324 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MALFRKLFYR KPPDGLLEIC DRVFVFDCCF STDSWEEENY KVYMAGVVNQ LQEHFPEASS LVFNFREVGT RSVMADVLSE HGLTIMDYPR HYEGCSLLPV 0101: EVMHHFLRSS ESWLSLGPNN LLLMHCESGA WPVLAFMLAA LLIYRKQYSG ESKTLDMIYK QAPRELLRLF SPLNPIPSQL RYLQYVSRRN LVSEWPPLDR 0201: ALTMDCVILR FIPDVSGQGG FRPMFRIYGQ DPFFVDDKKP KLLYTTPKKG KHLRVYKQAE CELVKIDINC HVQGDIVIEC LSLNDDMERE VMMFRVVFNT 0301: AFIRSNILML NRDEVDTLWH IKEFPKGFRV ELLFSDMDAA SSVDLMNFSS LEEKDGLPIE VFSKVHEFFN QVDWVDQTDA TRNMFQQLAI ANAVQEGLDG 0401: NSSPRLQGLS PKSIHDIMKH AAIENSAKFK LSSMSEVETI DTPEKPPTDS VKKFIAEDVH SVLQINNQEQ NASEDATKLL HQESPSLKLV HHSATVKPLV 0501: DDSKSPENAE ENFPKSPSAH DGKAISFSPP TPSPPHPVRP QLAQAGAPPP PPPLPAAASK PSEQLQHSVV QATEPLSQGN SWMSLAGSTF QTVPNEKNLI 0601: TLPPTPPLAS TSHASPEPSS KTTNSLLLSP QASPATPTNP SKTVSVDFFG AATSPHLGAS DNVASNLGQP ARSPPPISNS DKKPALPRPP PPPPPPPMQH 0701: STVTKVPPPP PPAPPAPPTP IVHTSSPPPP PPPPPPPAPP TPQSNGISAM KSSPPAPPAP PRLPTHSASP PPPTAPPPPP LGQTRAPSAP PPPPPKLGTK 0801: LSPSGPNVPP TPALPTGPLS SGKGRMLRVN LKNSPAKKLK PYHWLKLTRA VNGSLWAETQ MSSEASKYAL FILLSLISLM PPDSCMISNS LILYLLVRAP 0901: DIDMTELESL FSASAPEQAG KSRLDSSRGP KPEKVQLIEH RRAYNCEIML SKVKVPLQDL TNSVLNLEES ALDADQVENL IKFCPTREEM ELLKGYTGDK 1001: DKLGKCELFF LEMMKVPRVE TKLRVFSFKM QFTSQISELR NSLGVVNSAA EQVKNSEKFK RIMQTILSLG NALNQGTARG AAVGFKLDSL PKLSETRARN 1101: NRMTLMHYLC KVSFYSLRFC SFVDVLEEER YSLMDSLQIL AEKIPEVLDF TKELSSLEPA TKIQLKFLAE EMQAINKGLE KVVQELSLSE NDGPISHNFN 1201: KILKEFLHYA EAEVRSLASL YSGVGRNVDG LILYFGEDPA KCPFEQVVST LLNFVRLFNR AHEENGKQLE AEAKKNAAEK EKPKTGGLDT EIKKPLNEEV 1301: KEEKTKTSGL GKEMSDRLKE RTAP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)