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AT5G52980.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.925
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: ATPase, vacuolar ER assembly factor, Vma12 (InterPro:IPR021013); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IWEZeggNOG:ENOG4111SI5EMBL:AB018116EMBL:AK227424
EMBL:BT012520EMBL:BT014823EMBL:CP002688EnsemblPlants:AT5G52980
EnsemblPlants:AT5G52980.1entrez:835377GeneID:835377GO:GO:0016021
Gramene:AT5G52980.1hmmpanther:PTHR31394hmmpanther:PTHR31394:SF1HOGENOM:HOG000238917
InterPro:IPR021013KEGG:ath:AT5G52980OMA:CADCSRGPfam:PF11712
PhylomeDB:Q9LVV4Proteomes:UP000006548RefSeq:NP_200110.1TAIR:AT5G52980
TMHMM:TMhelixUniGene:At.29582UniProt:Q9LVV4
Coordinates (TAIR10) chr5:-:21482329..21483642
Molecular Weight (calculated) 24526.50 Da
IEP (calculated) 10.17
GRAVY (calculated) -0.30
Length 222 amino acids
Sequence (TAIR10)
(BLAST)
001: MDQPDPKNGS GLILSATEPL RSFLALASGD RRLSDELRGI ASDLRSKNTI PYKLLRAIWT GSDPSTRPDL LGLFSGSNFV FTSPKPREKS EELKLRLVKL
101: REIAERKEYA ELVKDITPKK QVEEPFSSYK DQLGFGLHVG LTMFTGYLVG YASFRALFNR NPALSAAGGI LGLVLAMLVE TLLFIIKTSK DDQIQSSKSF
201: TQSSPSFTQS SPSFTPTTKK NQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)