AT5G52020.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Integrase-type DNA-binding superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, transcription activator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: defense response to fungus; LOCATED IN: chloroplast; EXPRESSED IN: root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G12630.1); Has 5783 Blast hits to 5605 proteins in 247 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5767; Viruses - 2; Other Eukaryotes - 14 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:21124192..21124890 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 25107.50 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.58 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.58 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 232 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSNNNNSPTT VNQETTTSRE VSITLPTDQS PQTSPGSSSS PSPRPSGGSP ARRTATGLSG KHSIFRGIRL RNGKWVSEIR EPRKTTRIWL GTYPVPEMAA 101: AAYDVAALAL KGPDAVLNFP GLALTYVAPV SNSAADIRAA ASRAAEMKQP DQGGDEKVLE PVQPGKEEEL EEVSCNSCSL EFMDEEAMLN MPTLLTEMAE 201: GMLMSPPRMM IHPTMEDDSP ENHEGDNLWS YK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)