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AT5G50550.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.878
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Transducin/WD40 repeat-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat 2 (InterPro:IPR019782), WD40-repeat-containing domain (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G50650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XRQKeggNOG:KOG0771EMBL:AB025619EMBL:AK221493
EMBL:BT029728EMBL:CP002688EnsemblPlants:AT5G50550EnsemblPlants:AT5G50550.1
EnsemblPlants:AT5G50650.1entrez:835123entrez:835135Gene3D:2.130.10.10
GeneID:835123GeneID:835135GO:GO:0016021Gramene:AT5G50550.1
Gramene:AT5G50650.1hmmpanther:PTHR23284HOGENOM:HOG000070543InterPro:IPR001680
InterPro:IPR011047InterPro:IPR015943InterPro:IPR017986KEGG:ath:AT5G50550
KEGG:ath:AT5G50650KO:K14003OMA:ESKTHASPfam:PF00400
Pfscan:PS50082Pfscan:PS50294PhylomeDB:Q9FGP3PROSITE:PS50082
PROSITE:PS50294Proteomes:UP000006548Reactome:R-ATH-204005RefSeq:NP_568738.1
RefSeq:NP_680414.1SMART:SM00320SMR:Q9FGP3STRING:3702.AT5G50650.1
SUPFAM:SSF50998TAIR:AT5G50550TAIR:AT5G50650TMHMM:TMhelix
UniGene:At.49156UniProt:Q9FGP3
Coordinates (TAIR10) chr5:+:20576870..20578719
Molecular Weight (calculated) 42080.20 Da
IEP (calculated) 6.07
GRAVY (calculated) -0.10
Length 383 amino acids
Sequence (TAIR10)
(BLAST)
001: MASNQQPPSN LQTYGVPIYA VDWILEEAVR SKITKDQDDD DDDGSSSSSY IVLSGGGGEG RSGIPNVILI CRVDLHTNSL SEQPIGRRVI GTDLPYRMAI
101: HPRQGGLICA LPNSCRLFDW ENIIEDDNEE ESEKVVKELK DVGQQLSLSF NQDGTVLATG AEDGTLRVFE WPSMKTLLNE SKTHASVKSL TFSESGKFLV
201: SLGAPLCRVW DVNASAAIAS LSKEKDEMFA SCRFSVDNSG SEVLYVAANT QRGGSIITWD TTSWRRRSSK LIKRNNSISA FNVSADGKLL AVGTLEGDVL
301: IIDSTKMQTN QIVKKAHLGL VTALTFSPDS RCLVSVSFDS RARLTVIKQK GEKRRVYLWV AALLFVLVYV VLYYLMVAMG IIH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)