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AT5G48655.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to chitin; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G07200.2); Has 4604 Blast hits to 4589 proteins in 307 species: Archae - 0; Bacteria - 0; Metazoa - 2946; Fungi - 673; Plants - 438; Viruses - 20; Other Eukaryotes - 527 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XV78eggNOG:KOG0320EMBL:AK118224EMBL:AY150482
EMBL:CP002688EnsemblPlants:AT5G48655EnsemblPlants:AT5G48655.1EnsemblPlants:AT5G48655.2
EnsemblPlants:AT5G48655.3entrez:834923Gene3D:3.30.40.10GeneID:834923
GO:GO:0008270GO:GO:0010200Gramene:AT5G48655.1Gramene:AT5G48655.2
Gramene:AT5G48655.3hmmpanther:PTHR23041hmmpanther:PTHR23041:SF63HOGENOM:HOG000070995
InterPro:IPR001841InterPro:IPR013083InterPro:IPR017907KEGG:ath:AT5G48655
OMA:PANISNKPfam:PF13639Pfscan:PS50089PhylomeDB:Q8GS41
PROSITE:PS00518PROSITE:PS50089Proteomes:UP000006548RefSeq:NP_568701.1
RefSeq:NP_851156.1RefSeq:NP_974908.1scanprosite:PS00518SMART:SM00184
SMR:Q8GS41STRING:3702.AT5G48655.1SUPFAM:SSF57850TAIR:AT5G48655
UniGene:At.22299UniProt:Q8GS41
Coordinates (TAIR10) chr5:-:19731575..19732486
Molecular Weight (calculated) 22305.90 Da
IEP (calculated) 9.59
GRAVY (calculated) -0.47
Length 203 amino acids
Sequence (TAIR10)
(BLAST)
001: MNTSEVRVPR GNRRRKAVID LNAVPVDQEG TSASVRTLTV PITPSQPAPT MIDVDAIEDD VIESSASAFA EAKSKSRNAR RRPLMVDVES GGTTRFPANI
101: SNKRRRIPSS ESVIDCEHAS VNDEVNMSSR VSRSKAPAPP PEEPKFTCPI CMCPFTEEMS TKCGHIFCKG CIKMAISRQG KCPTCRKKVT AKELIRVFLP
201: TTR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)