AT5G48610.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; Has 43043 Blast hits to 23768 proteins in 1327 species: Archae - 108; Bacteria - 3952; Metazoa - 17076; Fungi - 3614; Plants - 1643; Viruses - 204; Other Eukaryotes - 16446 (source: NCBI BLink). | ||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:19712614..19714861 | ||||||||||||||||||||
| Molecular Weight (calculated) | 41159.40 Da | ||||||||||||||||||||
| IEP (calculated) | 10.18 | ||||||||||||||||||||
| GRAVY (calculated) | -1.60 | ||||||||||||||||||||
| Length | 354 amino acids | ||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSRCFPFPPP GYEKKIRTDE ADPLVKDKYK EKKHKKDKEK REGKEKKSKD RSKDKQKERK EKKDKHKDQK DKEKGKEKGK PLEEKKAELL TNAGHRENRV 101: TDTVQNNSNG ESKYVQDLAR RIRYDEEATG SQSAQRIDHP NQKNVGITEK AFENSPIEET SHRVDDNKRI NNQKNFTAAK SSENAVSRVS FGADHKRAEV 201: MGKPMENRDQ VRQTESAEKS HRKENVTKSE KPRDQEGVKK TEAKDKDRNK EKKEEKTESI NKTRQEKPKL IRGPKLEERE KDSPDLRNCK LPDVSRTSIK 301: NLHTEGNLGK RKDHMTNGFL YGELFSDPIL CLVNEECSCH INHRMIYGLV LRSI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)