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AT5G46960.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28818374 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plant invertase/pectin methylesterase inhibitor superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Plant invertase/pectin methylesterase inhibitor superfamily protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily protein (TAIR:AT5G46950.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IYX7eggNOG:ENOG410YUTEEMBL:AB013394EMBL:CP002688
EnsemblPlants:AT5G46960EnsemblPlants:AT5G46960.1entrez:834742Gene3D:1.20.140.40
GeneID:834742GO:GO:0004857Gramene:AT5G46960.1hmmpanther:PTHR31707
hmmpanther:PTHR31707:SF22HOGENOM:HOG000092994InterPro:IPR006501KEGG:00040+3.1.1.11
KEGG:00500+3.1.1.11KEGG:ath:AT5G46960OMA:EASSKCHPfam:PF04043
PhylomeDB:Q9FJR5Proteomes:UP000006548RefSeq:NP_568673.1SMART:SM00856
SMR:Q9FJR5SUPFAM:SSF101148TAIR:AT5G46960TIGRfam:TIGR01614
TIGRFAMs:TIGR01614UniGene:At.49424unipathway:UPA00545UniProt:Q9FJR5
Coordinates (TAIR10) chr5:-:19062220..19062744
Molecular Weight (calculated) 19070.80 Da
IEP (calculated) 4.72
GRAVY (calculated) -0.02
Length 174 amino acids
Sequence (TAIR10)
(BLAST)
001: MKFLVSLVIF SLFLNGFATA QTLIQDSCKK AFAKDPQLSY DFCVNSLTQD PQSKAATTLE SLVLASTKTA AAKITNLKGI VAQDLKDQRY QDIVEDLKLC
101: LGFYNDANDD LTTALANIKS RDYQGANINL SAALDVPGNC EDDFKEAKKT SPITNENSIL FKTILIPLAF TNML
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)