AT5G46510.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.830 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Disease resistance protein (TIR-NBS-LRR class) family | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G46520.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:18860451..18865210 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 153553.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.86 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.30 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1353 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MASSRNWVYD VFPSFSGTDV RRNFLSHLLK GLHKSVNSFR DQNMERSQSL DPMLKQAIRD SRIALVVFSK NYASSSWCLN ELLEIVKCKE EFGQMVIPIF 0101: YCLDPSHVRH QDGDFGKNFE ETCGRNTEEE KIQWEKALTD VANLAGFDSV TWDDEAKMIE EIANDVSGKL LSTSSTDSAE NSIGIEDHIA NMSVLLQLEA 0201: EEVRMVGIWG SSGIGKTTIA RALFNQLSRH FPVSKFIDRA FVYKSRETYK GANPDDPNMK LHLQGCFLSE ILGKKDIKID HLGALGERLK HQKTLIIIDD 0301: LDDLVVLDSL VGKTNWFGCG SRIIVITNNK QFLRAHGIDH IYEVSLPSKE RAQEMFCQSA FGENSPPEGF EELVVEIAWL AGSLPLGLTV FGSALRGRKK 0401: EYWVKMLPRL QNDLDGNIEE TLKVSYDAIG NVKDQALFRL IACLFNHVKV RDIELLLADS GLDVNIALEN LVDKSLIHVR NDHVEMHRLL QETGRNIVRS 0501: QSTDNPGERE FLVDSNDSRT VLSEGIGTRK VLGISLDTSK VSEFCVHENA FKGMGNLLFL DISSKTFIEE EVKVHLPEKI NYYSVQPKQL IWDRFPLKCM 0601: PYTFLRNLVK LEMHDSKLEK LWEGAMSFTC LKELDMWASK YLKEIPDLSK ATNIEKLDFG HCWSLVELPS SIRNLNKLLE LNMEYCGELE TLPTGFNLKS 0701: LDYLNFNECW KLRTFPEFAT NISNLILAET SIEEYPSNLY FKNVRELSMG KADSDENKCQ GVKPFMPMLS PTLTLLELWN IPNLVELSSS FQNLNNLERL 0801: DICYCRNLES LPTGINLESL VSLNLFGCSR LKRFPDISTN IKYLDLDQTG IEEVPWQIEN FFNLTKLTMK GCRELKCVSL NIFKLKHLGE VSFSNCGALT 0901: RVDLSCYPSG VEMMKADNAD IVSEETTSSL PDSCVLNVNF MDCVNLDREP VLHQQSIIFN SMILPGEEVP SYFTYRTSDS QPFGTSSSLP IPLLPTQLSQ 1001: PFFRFRVCAV VSASNGVYIG VYSRFKGRIG NKFDSFGELH KFMEIEKGIH LCIFDCRIRL YKDNVPLSQL NYDHVDINIH ITSGDWRSTV VLKEWGIRLL 1101: EDCSSAENRL GNPNSTLPHV CVEDEENLVN GTEQGDRGDV VTETSSKQNE DVILLQRSAD SMFSRMSGKE MISYFTHRTT GTSLTNIPLP HTSPSQPFFR 1201: FKAFAVVGCK SSGQFSYFVT HISCRFKDGF ENQPRRLYKA ENGNHLDIYE CSFPLYQGNA SPAEMNYDRV DIQLHLRYRS DSTVRLIVWG IRLIEDCSSS 1301: ENQLDSETDQ FEECGNSDIG HEIDQSEECE DMDDTGGICI GIDQSEERGD SDE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)