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AT5G44960.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.570
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : F-box/RNI-like/FBD-like domains-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box/RNI-like/FBD-like domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), F-box domain, Skp2-like (InterPro:IPR022364), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT5G44980.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:19776eggNOG:ENOG410JK4VeggNOG:ENOG410Z231EMBL:AB010693
EMBL:CP002688EnsemblPlants:AT5G44960EnsemblPlants:AT5G44960.1entrez:834527
Gene3D:3.80.10.10GeneID:834527Gramene:AT5G44960.1hmmpanther:PTHR32212
hmmpanther:PTHR32212:SF126InParanoid:Q9FLA1InterPro:IPR001810InterPro:IPR006566
InterPro:IPR013101InterPro:IPR032675KEGG:ath:AT5G44960PaxDb:Q9FLA1
Pfam:PF07723Pfam:PF08387Pfam:Q9FLA1Pfscan:PS50181
PRO:PR:Q9FLA1PROSITE:PS50181ProteinModelPortal:Q9FLA1Proteomes:UP000006548
RefSeq:NP_199309.2SMART:SM00579SMR:Q9FLA1SUPFAM:SSF52047
SUPFAM:SSF81383TAIR:AT5G44960UniGene:At.55372UniProt:Q9FLA1
Coordinates (TAIR10) chr5:+:18153852..18155391
Molecular Weight (calculated) 48586.70 Da
IEP (calculated) 7.84
GRAVY (calculated) 0.02
Length 416 amino acids
Sequence (TAIR10)
(BLAST)
001: MEECDYINEL PDSLLTQILL DLRTKDSVKT SVSSKRWRNL WLNVPGLDLF SLQFTNPHHE EGLIKFMDRF MESNCRSRLQ KFMIRYFECN GYRDRFMELI
101: GTVVDCGIQH LYVYMHTCNR VDFIRQNIYK SKTLVSLKLY NVELKNPDFV VSLPCLKILK LMKICYGEDG PLVVEKLISG CPVLEDLELI KPFDILTQDV
201: ILFLRIDAPR LKYMTFYESR FDRIMVKNMS SLFSIEIRAK SSFEYGGLLK AEDPRKRAII CDFLTVISSV RHMIISGSIL EELHSYSKLG WIPQFRNLYH
301: LQASFFGTSL QLLPTFLESC PNLKNLIMDY GAFKEENIDF HEVPQCLIST LEYVHINKLM MMEQSGIKLV NYFIENSAVL KKLTLRFSFF SSIESESYKK
401: LLTSTKLSPT CQVIFV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)