AT5G44670.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.715 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Domain of unknown function (DUF23) | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Domain of unknown function (DUF23); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF23 (InterPro:IPR008166); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF23) (TAIR:AT4G20170.1); Has 204 Blast hits to 204 proteins in 35 species: Archae - 0; Bacteria - 27; Metazoa - 39; Fungi - 0; Plants - 129; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:18019209..18021266 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 59958.90 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.11 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.32 | ||||||||||||||||||||||||||||||||||||
| Length | 519 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAKERDQNTK DKNLLICFLW NFSAELKLAL MALLVLCTLA TLLPFLPSSF SISASELRFC ISRIAVNSTS VNFTTVVEKP VLDNAVKLTE KPVLDNGVTK 101: QPLTEEKVLN NGVIKRTFTG YGWAAYNFVL MNAYRGGVNT FAVIGLSSKP LHVYSHPTYR CEWIPLNQSD NRILTDGTKI LTDWGYGRVY TTVVVNCTFP 201: SNTVINPKNT GGTLLLHATT GDTDRNITDS IPVLTETPNT VDFALYESNL RRREKYDYLY CGSSLYGNLS PQRIREWIAY HVRFFGERSH FVLHDAGGIT 301: EEVFEVLKPW IELGRVTVHD IREQERFDGY YHNQFMVVND CLHRYRFMAK WMFFFDVDEF IYVPAKSSIS SVMVSLEEYS QFTIEQMPMS SQLCYDGDGP 401: ARTYRKWGFE KLAYRDVKKV PRRDRKYAVQ PRNVFATGVH MSQHLQGKTY HRAEGKIRYF HYHGSISQRR EPCRHLYNGT RIVHENNPYV LDTTMRDIGL 501: AVKTFEIRTI GDRLLRTRQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)