suba logo
AT5G41270.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: RNAse P, Rpr2/Rpp21 subunit (InterPro:IPR007175); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IYGMeggNOG:ENOG410YV1NEMBL:AK227897EMBL:BT004814
EMBL:CP002688EnsemblPlants:AT5G41270EnsemblPlants:AT5G41270.1entrez:834128
GeneID:834128Gramene:AT5G41270.1hmmpanther:PTHR36072hmmpanther:PTHR36072:SF1
HOGENOM:HOG000147084InterPro:IPR007175KEGG:ath:AT5G41270OMA:SCQRCET
Pfam:PF04032PhylomeDB:Q84VV1Proteomes:UP000006548RefSeq:NP_198943.3
STRING:3702.AT5G41270.1TAIR:AT5G41270UniGene:At.30242UniProt:Q84VV1
Coordinates (TAIR10) chr5:+:16507797..16508813
Molecular Weight (calculated) 28944.20 Da
IEP (calculated) 11.01
GRAVY (calculated) -0.93
Length 258 amino acids
Sequence (TAIR10)
(BLAST)
001: MGKRGPKKLT NTQGGGGPNL KSVLRHEHLK NLALWSSTGD TPIPSLASLL GRRLAADTES TGITTDPDLV SCQRCETILK PGFNCNVRIE KVSANVKKKR
101: NRCKKSNNIC FPQNNVVYHC NFCSHRNLKR GTAKGQMKEL YPFKPKTARS SRPKIKKEMT MPQEIQSNML SSPERSVKDQ VEEKSVGDTP KPMMLTLERD
201: RRIRKPKSKK PSEPQSVPEK TVGGSNKRKR KSPWTSMKEI AETNKSSKAG NFKIPFLL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)