AT5G40000.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.820 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G28600.1); Has 22558 Blast hits to 20981 proteins in 2878 species: Archae - 1356; Bacteria - 8037; Metazoa - 3478; Fungi - 2844; Plants - 2554; Viruses - 38; Other Eukaryotes - 4251 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:16011072..16012484 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 54097.50 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.97 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.47 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 470 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMMMGDSFGS IGSSMASLFF LWATIQQIFP DHLKITIKEF LLSSFQQLCF AQRVSDHFTN LFSPYVEIHF PESDEYSFNQ AFSAIDTYLD SKATDKTKHL 101: RGSQVKESKG LVLKRNEAKV RDEYKGANVW WERVVDNDGN RYYKLTFHNR ARTLITNSYI KYVVEEGKSI IVKNKQTRLF TNNLSTQWVF GQNMWRSIEF 201: EHPASFQTLA MDPKKKEEIV NDLIAFSNGK EYYKKIGKAW KRGYLLYGPP GTGKSTMISA MANLLNYNIY DLELTAVKNN SELKKLLTAT SSKSIIVIED 301: IDCSADFTSN RIKKESNSRE RYGKEDKDEN SVTLSGLLNF IDGIWSACGQ ERIVVFTTNH LEKLDPALIR RGRMDMHIEL SYCTYEAFKI LAKNYLDLDG 401: DDAHPLFSEI KALLEETKIS PADVAENLMA RNQQIDVDKS LNLLISALEE ENQYQRSQQE KKKSKFKIFG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)