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AT5G39800.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Mitochondrial ribosomal protein L27
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Mitochondrial ribosomal protein L27; CONTAINS InterPro DOMAIN/s: Ribosomal protein L27/L41, mitochondrial (InterPro:IPR019189); BEST Arabidopsis thaliana protein match is: Mitochondrial ribosomal protein L27 (TAIR:AT5G40080.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111ND6eggNOG:KOG4756EMBL:AK118065EMBL:BT005452
EMBL:CP002688EnsemblPlants:AT5G39800EnsemblPlants:AT5G39800.1entrez:833976
GeneID:833976GO:GO:0005840Gramene:AT5G39800.1hmmpanther:PTHR21338
HOGENOM:HOG000231555InterPro:IPR019189KEGG:ath:AT5G39800KO:K17422
OMA:IQVNTNEPfam:PF09809Proteomes:UP000006548RefSeq:NP_568574.1
SMR:Q8GXS6STRING:3702.AT5G39800.1TAIR:AT5G39800UniGene:At.30326
UniGene:At.49113UniProt:Q8GXS6
Coordinates (TAIR10) chr5:+:15935580..15936936
Molecular Weight (calculated) 10476.70 Da
IEP (calculated) 10.74
GRAVY (calculated) -0.62
Length 94 amino acids
Sequence (TAIR10)
(BLAST)
1: MTTIGGLLMG IGRSFRRKRS SSLDILSPKR APRDFYKGKN CKPTGFHTRK GGYVVQPDKL PNYVVPDLTG FKLKPYVSQC PIQVNTNEST EASK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)