AT5G38850.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.905 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Disease resistance protein (TIR-NBS-LRR class) | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Disease resistance protein (TIR-NBS-LRR class); FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT2G16870.1); Has 22386 Blast hits to 16686 proteins in 703 species: Archae - 22; Bacteria - 1475; Metazoa - 2460; Fungi - 122; Plants - 17655; Viruses - 0; Other Eukaryotes - 652 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:15555187..15558430 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 113058.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.51 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.27 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 986 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASARTWRYN VFPSFHGGDI RKTFLSHLRK QFNSNGITMF DDQGIERSQT IAPALIQAIR ESRISIVVLS KNYASSSWCL NELVEILKCK DVVMPIFYEV 101: DPSDVRKQTG DFGKAFKNSC KSKTKEERQR WIQALIFVGN IAGEHSLKWE NEADMIEKIA KDVSDKLNAT PSKDFDAFVG LEFHIRELSS LLYLDYEQVR 201: IVGICGPAGI GKTTIARALQ SLLSSNFQRS CFMENVRGSL NIGLDEYGLK LDLQERLLSK IMNQKGMRIE HLGTIRDRLH DQKVLIILDD VNDLDLYALA 301: DQTTWFGPGS RIIVTTEDNE LLQKHDINNV YHVDFPSRKE ALEIFCRCAF RQSSAPDTIL KLAERVTELC GNLPLGLCVI GSSLHGKTED EWEILIRRLE 401: ISLDRDNEAQ LRVGYDSLHE NEQALFLSIA VFFNYKDRQL VMAMLLDSNL DVEYGLRTLA NKSLIHISRN EKIVMHNLLQ HVGRQAIQRQ EPWKRHILID 501: ADEICNVLEN DTDARIVSGI SFDISRIGEV FLSERAFKRL CNLQFLRVFK TGYDEKNRVR IPENMEFPPR LRLLQWEAYP RRSLSLKLNL EYLVELDMEG 601: SLLEKLWDGT QPLANLKKMS LSSSWYLKKL PDLSNATNLE ELDLRACQNL VELPSSFSYL HKLKYLNMMG CRRLKEVPPH INLKSLELVN MYGCSRLKSF 701: PDISTNISSL DISYTDVEEL PESMTMWSRL RTLEIYKSRN LKIVTHVPLN LTYLDLSETR IEKIPDDIKN VHGLQILFLG GCRKLASLPE LPGSLLYLSA 801: NECESLESVS CPFNTSYMEL SFTNCFKLNQ EARRGIIQQS FSHGWASLPG RELPTDLYHR STGHSITVRL EGKTPFSAFF GFKVFLVISP NHDAEETSNS 901: PLFCPRIGKI GCSDDETPIY IIPKPRAEHL VMFHSDLHNK EKCHEVGNEI LFEFSNISDT YEIIECGVRF YTDEQVKSVK GEMNMK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)