AT5G32470.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Haem oxygenase-like, multi-helical | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Haem oxygenase-like, multi-helical; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haem oxygenase-like, multi-helical (InterPro:IPR016084), TENA/THI-4 protein/Coenzyme PQQ biosynthesis protein C (InterPro:IPR004305); Has 1988 Blast hits to 1985 proteins in 797 species: Archae - 79; Bacteria - 1526; Metazoa - 2; Fungi - 151; Plants - 51; Viruses - 0; Other Eukaryotes - 179 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:-:12085328..12088569 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 68967.10 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.24 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.16 | ||||||||||||||||||||||||||||||||||||||||
| Length | 617 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRFLFPTRLI NNSSLGLLRS PHTTAPIRSL WFRTKSPVFR SATTPIMTAV AFSSSLSIPP TSEEALPGKL WIKFNRECLF SIYSPFAVCL AAGNLKIDTF 101: RQYIAQDVHF LKAFAHAYEL AADCADDDDD KLAISDLRKS VMEELKMHDS FVQDWDLDIN KEVSVNSATL RYTEFLLATA SGKVEGCKAP GMLDTPFEKT 201: KVAAYTLGAV TPCMRLYAFL GKEFGSLLDL SDVNHPYKKW IDNYSSDAFQ ASAKQTEDLL EKLSVSMTGE ELDIIEKLYQ QAMKLEVEFF HAQPLAQPTI 301: VPLLKNHSKD DLVIFSDFDL TCTVVDSSAI LAEIAIVTAP KDEQSRSGQQ IHRMLSSDLK NTWNLLSKQY TEHYEECIES ILNKKKADKF DYEGLCKALE 401: QLSDFEKEAN NRVIESGVLK GLNLEDIKRA GERLILQDGC INVFQKILKT ENLNAELHVL SYCWCGDLIR AAFSAGGVDA VEVHANEFTF EESISTGEIE 501: RKVESPINKA QQFKSILQNR KNENNKKSFL SVYIGDSVGD LLCLLEADIG IVVSSSSSLR RVGSHFGVSF VPLFSGIVQK QKQHTEESSS SAWKGLSGTL 601: YTVSSWAEIH SFALGWE |
||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)