AT5G28850.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 0.939 What is SUBAcon? |
|
||||||||
| Experimental Localisations and PPI |
|
||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||
| Description (TAIR10) | protein_coding : Calcium-binding EF-hand family protein | ||||||||
| Curator Summary (TAIR10) |
|||||||||
| Computational Description (TAIR10) |
Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT5G28900.1); Has 631 Blast hits to 631 proteins in 122 species: Archae - 0; Bacteria - 0; Metazoa - 303; Fungi - 2; Plants - 142; Viruses - 0; Other Eukaryotes - 184 (source: NCBI BLink). | ||||||||
| Protein Annotations |
|
||||||||
| Coordinates (TAIR10) | chr5:-:10877360..10879416 | ||||||||
| Molecular Weight (calculated) | 38761.80 Da | ||||||||
| IEP (calculated) | 4.52 | ||||||||
| GRAVY (calculated) | -0.42 | ||||||||
| Length | 324 amino acids | ||||||||
| Sequence (TAIR10) (BLAST) |
001: MKASLYSRFY SFLFFFSWQD DFKPLLKELL ATHPGLEFLQ STPEFQERYA ETVTYRIFYY INRSGNGRIT FRELKRGNLI DAMLHADEEE DINKVLRYFS 101: YEHFYVIYCK FWELDTDHDF LIDKENLMRY GNHALTYRIV DRIFSQVARK FTSKVEGKMG YEDFVYFILA EEDKSSVPSL EYWFKCIDLD ANGIITRNEM 201: QFFYEEQLHR MECMAQEAVL FEDILCQMID MIGPENESHI TLHDLKGSKL SGNVFNILFN LNKFMAFETR DPFLIRQERE NPTLTDWDRF AHREYIRLSM 301: EEDVEDASNG SAEVWDDSSL EAPF |
||||||||
| See Also |
|
||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)