AT5G28237.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.798 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Pyridoxal-5'-phosphate-dependent enzyme family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Pyridoxal-5'-phosphate-dependent enzyme family protein; FUNCTIONS IN: pyridoxal phosphate binding, tryptophan synthase activity, catalytic activity; INVOLVED IN: tryptophan biosynthetic process, metabolic process, tryptophan metabolic process; CONTAINS InterPro DOMAIN/s: Tryptophan synthase, beta chain (InterPro:IPR006654), Tryptophan synthase, beta chain, conserved site (InterPro:IPR006653), Pyridoxal phosphate-dependent enzyme, beta subunit (InterPro:IPR001926); BEST Arabidopsis thaliana protein match is: tryptophan synthase beta-subunit 2 (TAIR:AT4G27070.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:-:10207477..10213542 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 50647.70 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.04 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.17 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 465 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSSSKIQVRG QPLLRVPARN HRMTHLVVCG VSTKRHHREI NALSSNSGPS LDSVPTRTDK RQFLRGDGNG KFGRFGGKFV PETLMSRLIE LEDEFNFVRC 101: DHEFQEELTT ALRDYVGRET PLYFAERLTE HYKNIVPTIE GGPEIYLKRE DLSHCGSHKI NNALAQAMIS RRLGCSRVVA ATGAGQHGVA TAAACAKLSL 201: ECTVFMGAAD IEKQSFNVLS MKLLGAQVIS VEGTFKDASS EAIRNWVENL YTTYYLSGTV VGPHPCPIIV REFQSVIGKE TRRQAKQLWG GKPDVLVACV 301: GSGSNALGLF HEFVGDEDVR LVGVEAAGLG LDSGKHSATL AFGDVGVYHG SMSYLLQDDQ GQILKPHSVG VGLEYPGVGP EISFMKETGR AEFYTATDEE 401: AIQACMRLSR LEGIIPALEA SHALAFLDKL VPTLRDGAKV VVNCSGRGDK DLDTLIQRGM PSSFC |
||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)