AT5G22860.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Serine carboxypeptidase S28 family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Serine carboxypeptidase S28 family protein; FUNCTIONS IN: serine-type peptidase activity, peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S28 (InterPro:IPR008758); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT2G24280.1); Has 1224 Blast hits to 1198 proteins in 170 species: Archae - 0; Bacteria - 11; Metazoa - 605; Fungi - 185; Plants - 238; Viruses - 0; Other Eukaryotes - 185 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:7639511..7642945 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 56457.40 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.27 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.16 | ||||||||||||||||||||||||||||||||
| Length | 502 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSLPYTILIL FIFSTSSSYL IPLAHSKIAR LGISSKTLKN EPDGSTQKVD ESNLKMYYFN QTLDHFTFTP ESYMTFQQRY AIDSTHWGGA KANAPILAFL 101: GEESSLDSDL AAIGFLRDNG PRLNALLVYI EHRYYGETMP FGSAEEALKN ASTLGYLNAA QALADYAAIL LHVKEKYSTN HSPIIVIGGS YGGMLAAWFR 201: LKYPHIALGA LASSAPLLYF EDTRPKFGYY YIVTKVFKEA SERCYNTIRN SWIEIDRVAG KPNGLSILSK QFKTCAPLNG SFDIKDFLDT IYAEAVQYNR 301: GPNFWVAKVC NAINANPPNR RYNLLDRIFA GVVALVGNRT CYDTKMFAQP TNNNIAWRWQ SCSEIVMPVG YDKQDTMFPT APFNMTSYID GCKSYHGVTP 401: RPHWITTYFG IQEVKLILQK FGSNIIFSNG LSDPYSVGGV LEDISDTLVA ITTKNGSHCL DITLKSKEDP EWLVIQREKE IKVIDSWIST YQNDLRDLNM 501: PV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)