AT5G22070.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.872 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Core-2/I-Branching enzyme (InterPro:IPR021141); BEST Arabidopsis thaliana protein match is: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (TAIR:AT3G52060.2); Has 580 Blast hits to 577 proteins in 24 species: Archae - 0; Bacteria - 12; Metazoa - 0; Fungi - 0; Plants - 550; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:7308255..7309343 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 41638.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.46 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.14 | ||||||||||||||||||||||||||||||||
| Length | 362 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MFSNQFVLFF SLLLCLPFVF FFVAPHVFPS PPGESLIPIS DEIDDRSLFI AAAGSTSLSH LSSGNPNPKL KIAFLFLTNS DLHFAPIWDR FFSGHSKSLY 101: NVYVHADPFV NVTRPGNGSV FENAFIANAK RTARASPTLI SATRRLLATA FLDDPANTYF AVLSQYCIPL HSFNYVYSSL FESSIFDKSD PDPNPNPRGI 201: RILYRSFMEL ISDEPRLWKR YTARGRYAMM PEVPFEKFRV GSQFFVMTRR HALLTIKDRI LWRKFKLPCY RSDECYPEEH YFPTLLNMKD PDGCTGYTLT 301: RVNWTGTVKG HPYTYKPKEV VPELIQRLRR SNHSSSYFFA RKFTPDCLKP LLAIADSVIF RD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)