AT5G19700.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.838 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : MATE efflux family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT4G29140.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:6660821..6662347 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 54330.20 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.60 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.75 | ||||||||||||||||||||||||||||||||||||||||
| Length | 508 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: METPNIISHT NLLSKIDLEK QNPAPIFPTI TELKSEARSL FSLAFPTILA ALILYARSAI SMLFLGHIGE LELAGGSLAI AFANITGYSV LAGLALGMDP 101: LCSQAFGAGR PKLLSLTLQR TVLFLLTSSV VIVALWLNLG KIMIYLHQDP SISSLAQTYI LCSIPDLLTN SFLHPLRIYL RAQGITSPLT LATLAGTIFH 201: IPMNFFLVSY LGWGFMGVSM AAAASNLLVV IFLVAHVWIA GLHQPTWTRP SSECFKDWGP VVTLAIPSCI GVCLEWWWYE IMTVLCGLLI DPSTPVASMG 301: ILIQTTSLLY IFPSSLGLAV STRVGNELGS NRPNKARLSA IVAVSFAGVM GLTASAFAWG VSDVWGWIFT NDVAIIKLTA AALPILGLCE LGNCPQTVGC 401: GVVRGTARPS MAANINLGAF YLVGTPVAVG LTFWAAYGFC GLWVGLLAAQ ICCAAMMLYV VATTDWEKEA IRARKLTCTE GVDVVITTTQ TNGDLSEPLI 501: YVVTVATD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)