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AT5G18790.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal protein L33 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein L33 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular, large ribosomal subunit; CONTAINS InterPro DOMAIN/s: Ribosomal protein L33 (InterPro:IPR001705); BEST Arabidopsis thaliana protein match is: Ribosomal protein L33 family protein (TAIR:AT3G06320.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0267eggNOG:KOG3505EMBL:AC011623EMBL:AK175775
EMBL:AY084459EMBL:BT010773EMBL:BT011263EMBL:BT026014
EMBL:CP002686EMBL:CP002688EnsemblPlants:AT3G06320.1EnsemblPlants:AT5G18790
EnsemblPlants:AT5G18790.1entrez:819806entrez:831997GeneID:819806
GeneID:831997GO:GO:0003735GO:GO:0005840GO:GO:0006412
Gramene:AT3G06320.1Gramene:AT5G18790.1HAMAP:MF_00294hmmpanther:PTHR15238
hmmpanther:PTHR15238:SF10HOGENOM:HOG000004839InterPro:IPR001705InterPro:IPR011332
KEGG:ath:AT3G06320KEGG:ath:AT5G18790KO:K02913OMA:NRRNTQA
Pfam:PF00471PhylomeDB:Q9SQT5Proteomes:UP000006548RefSeq:NP_187283.1
RefSeq:NP_197380.1SMR:Q9SQT5STRING:3702.AT5G18790.1SUPFAM:SSF57829
TAIR:AT3G06320TAIR:AT5G18790TIGRfam:TIGR01023TIGRFAMs:TIGR01023
UniGene:At.31380UniGene:At.40540UniProt:Q9SQT5
Coordinates (TAIR10) chr5:-:6266324..6266500
Molecular Weight (calculated) 6958.73 Da
IEP (calculated) 11.33
GRAVY (calculated) -0.65
Length 58 amino acids
Sequence (TAIR10)
(BLAST)
1: MGDKRKKTFM FIRLVSAAGT GFFYVKRKST KGLLEKLEFR KYDPRVNRHV LFTEQKMK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)