AT5G13380.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.995 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Auxin-responsive GH3 family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Auxin-responsive GH3 family protein; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: Auxin-responsive GH3 family protein (TAIR:AT5G13370.1); Has 1506 Blast hits to 1424 proteins in 238 species: Archae - 0; Bacteria - 490; Metazoa - 52; Fungi - 2; Plants - 670; Viruses - 0; Other Eukaryotes - 292 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:4289912..4292355 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 70278.60 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.53 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.10 | ||||||||||||||||||||||||||||||||
| Length | 624 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTPFICTERE RDGSDPIHCS QRKDNRKAAI MLPKFDPTNP LATMSVLEDV TTNVKKIQDS LLEAILSRNS QTEYLRGFLT GQLDKQSFKK NVPIVTYEDI 101: KPHIDRIANG EPSDLICDRP ISLLLATTGT SGGIPKLIPL TAEELEQRIL FGFLYVPLVF KHIEGLTQGK SLMFYFVTRE SETVSGLMVR FMITCVLKSV 201: NPTNSFLWDR VQISPHAIAI CEDTNQGMYC QLLCGLLQRE HVARLGAPYA SSFLKVIKFL EDHWPELCSN IRTGRLSDWI TDAQCVSGIG NFLTAPDPDL 301: ANLIEQECSK TSWEAILSRI WPKAKCIEAV ITGTMAQYIP LLEFYGGGLP LVSSWYGSSE CFIGINLNPL SKPSDVSYTI IPSMGYFEFI EVVKDRQEAG 401: HVPADPVVVD LVDVKIGHDY ELLVTTFSGL YRYRLGDVLR VTGFHNNAPQ FYFVGRQNVV LSIDLSKTYE EDLLKAVKNA SLLLEPHDLM LMDFTSRVDL 501: SSLPGHYVLY WELGNKFKNA KLDPKSNVLE ECCLTVEESL DSIYREGRKN DKIIGPLEIK VVKPGAFDEL MNFFLSRGSS VSQYKTPRSV THEEALNILE 601: SNVVSEFLSR KTPSWELHEL HSSR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)