AT5G12920.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Transducin/WD40 repeat-like superfamily protein | ||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943); Has 51 Blast hits to 51 proteins in 22 species: Archae - 0; Bacteria - 4; Metazoa - 5; Fungi - 2; Plants - 36; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | ||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:4077917..4082585 | ||||||||||||||||||||
| Molecular Weight (calculated) | 60150.50 Da | ||||||||||||||||||||
| IEP (calculated) | 8.24 | ||||||||||||||||||||
| GRAVY (calculated) | -0.44 | ||||||||||||||||||||
| Length | 537 amino acids | ||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRSHKDTPAP TLSYQVVSSP LKAVETGHKV RMDLIKKSKL RYHRGQKSME KYLVSPEPSP AKSRTTVRRP WKRSLIEVNG RLDSAYRHEL YSRVAHSYSE 101: IGKFSHFYHL NENPCITHMM QIQSLYQCPT MRGVAGLDFD NRGIFLVSVT RSGCLMVHDF ESLYCQSKLG PGSAEDESKH VVHFSYPPGR EFDVARWNPS 201: NQNEVACTSR KHDQVLIFDI SYMSPKPTEV LQTRQKLSII GRKISRGLSD VAITSDEDSR IFSPDTLGMV HVWDRRAGVS PCIELSTDRY DSIKSIQIYV 301: DNQTIFGAGK EGIIHIWDLR GGRNSSAFQS RKDVSLTRGE LELAMAMSQL PLASLHLAPK LQKIASLKAQ SEIVPKEIHS IDVNPSSPHQ LAFHLDDGWS 401: GVLDIYKSEV THVHCPPPAW LDGSNSSADL ILRKPSWLPT SSIYVVGSMS EKGIHVLDFH PSSRSPCHVD YDEDTQRNEK RDKCNHRNKF VSLSETVTGC 501: AAHPLNGMIV AGTQNSSLLL IAQMHCSSSS ETAEGEL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)