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AT5G11000.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.982
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plant protein of unknown function (DUF868)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Plant protein of unknown function (DUF868); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF868, plant (InterPro:IPR008586); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF868) (TAIR:AT2G25200.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKP0eggNOG:ENOG410YH2UEMBL:AL365234EMBL:AY057676
EMBL:AY086621EMBL:AY116945EMBL:CP002688EnsemblPlants:AT5G11000
EnsemblPlants:AT5G11000.1entrez:830967GeneID:830967GO:GO:0005886
Gramene:AT5G11000.1hmmpanther:PTHR31972hmmpanther:PTHR31972:SF3HOGENOM:HOG000242823
InterPro:IPR008586KEGG:ath:AT5G11000OMA:EISIDCRPfam:PF05910
PhylomeDB:Q9LEU1PIR:T50809Proteomes:UP000006548RefSeq:NP_196661.1
TAIR:AT5G11000UniGene:At.6021UniGene:At.75258UniProt:Q9LEU1
Coordinates (TAIR10) chr5:-:3479166..3480335
Molecular Weight (calculated) 43045.60 Da
IEP (calculated) 9.44
GRAVY (calculated) -0.48
Length 389 amino acids
Sequence (TAIR10)
(BLAST)
001: MSPSWLRPTA DHNHPPPQPP SQSPSPLSSG DPNLTTCLYQ TDHGVFYLTW SRTFLGGHSV NLFLHSQDYY NHSSPLSFSS ADLSLSSAVS FHLNLNTLAF
101: WKKRGSRFVS PKIQVFWDLS KAKFDSGSEP RSGFYIAVVV DGEMGLLVGD SVKEAYARAK SAKPPTNPQA LLLRKEHVFG ARVFTTKARF GGKNREISID
201: CRVDEDAKLC FSVDSKQVLQ IKRLRWKFRG NEKVEIDGVH VQISWDVYNW LFQSKSSGDG GGGGGHAVFM FRFESDPEAE EVCETKRKEE EDEKNRNGIV
301: LWKPKKQCGN SFGIKGIVEW RKMRKRFVKS KRSSSSSSIS MSSASSACSS SVMEWASSAD EAEYGGGGCS GSGSGNGLGF SLLVYAWIK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)