AT5G10630.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.989 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Translation elongation factor EF1A/initiation factor IF2gamma family protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Translation elongation factor EF1A/initiation factor IF2gamma family protein; FUNCTIONS IN: GTP binding, translation elongation factor activity, GTPase activity, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, C-terminal (InterPro:IPR004160), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Zinc finger, RanBP2-type (InterPro:IPR001876), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: Translation elongation factor EF1A/initiation factor IF2gamma family protein (TAIR:AT1G18070.2); Has 86905 Blast hits to 86827 proteins in 18414 species: Archae - 1008; Bacteria - 36763; Metazoa - 20627; Fungi - 12842; Plants - 2029; Viruses - 6; Other Eukaryotes - 13630 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:3360561..3364414 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 72302.70 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.18 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.39 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 667 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPRKGLSNFD DYDDGFDDDD DAFDYDYDVD IDEHEEAAAE PKEEIAKTQG LWRCAICTYD NVETMFVCDI CGVLRHPVAG NQSINKNTAP FKFDAPSPDD 101: LVSNGLTSSK TGPKGSGDAS MRQKEKQDSV EQKPLKKGGD SSETSSRGRH DKLDDKGGAG GIKSGKSLPK AKADMSNETS SSSKYMETSE SLTGTMNKMS 201: LIGETENSSD IKIRGPKSQS KHKPEEWMLL DKESDALSQL NLAIVGHVDS GKSTLSGRLL HLLGRISQKQ MHKYEKEAKL QGKGSFAYAW ALDESAEERE 301: RGITMTVAVA YFNSKRHHVV LLDSPGHKDF VPNMIAGATQ ADAAILVIDA SVGAFEAGFD NLKGQTREHA RVLRGFGVEQ VIVAINKMDI VGYSKERFDL 401: IKQHVGSFLQ SCRFKDSSLT WIPLSAMENQ NLVAAPSDNR LSSWYQGPCL LDAVDSVKSP DRDVSKPLLM PICDAVRSTS QGQVSACGKL EAGAVRPGSK 501: VMVMPSGDQG TIRSLERDSQ ACTIARAGDN VALALQGIDA NQVMAGDVLC HPDFPVSVAT HLELMVLVLE GATPILLGSQ LEFHVHHAKE AATVVKLVAM 601: LDPKTGQPTK KSPRCLTAKQ SAMLEVSLQN PVCVETFSES RALGRVFLRS SGRTVAMGKV TRIIQDS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)