AT5G10150.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.996 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Domain of unknown function (DUF966) | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF966 (InterPro:IPR010369), Uncharacterised conserved protein UCP031043 (InterPro:IPR021182); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF966) (TAIR:AT5G59790.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:3182176..3183834 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 47955.60 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.30 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.96 | ||||||||||||||||||||||||||||||||||||
| Length | 414 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEAVRCRRGR ENNKSPERII RSLNHHQHDE ELEEEVKTKK PIFRRVQVVY YLTRNGHLEH PHFIEVISPV NQPLRLRDVM NRLTILRGKC MTSQYAWSCK 101: RSYRNGFVWN DLAENDVIYP SDCAEYVLKG SEITDKFQEV HVNRPLSGSI QEAPKSRLLR SKLKPQNRTA SFDDAELYVG EEEEEEDGEY ELYEEKTSYT 201: SSTTPQSRCS RGVSTETMES TEQKPNLTKT EQDLQVRSDS SDLTRSNPVV KPRRHEVSTR VEDGDPVEPG SGRGSMWLQM ISCGHIATKY YAPSVMNPRQ 301: KEENLRKGVL CKNIVKKTVV DDEREMIRFM SENPRFGNPQ AEEKEYFSGS IVESVSQERV TAEPSLRRSN SFNEERSKIV EMAKETKKKE ERSMAKVKCI 401: PRTCLMSSSK QIKK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)