AT5G09670.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.978 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : loricrin-related | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
loricrin-related; BEST Arabidopsis thaliana protein match is: loricrin-related (TAIR:AT5G64550.1); Has 3115 Blast hits to 1776 proteins in 152 species: Archae - 0; Bacteria - 24; Metazoa - 1222; Fungi - 31; Plants - 508; Viruses - 3; Other Eukaryotes - 1327 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:2996109..2997749 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 56862.30 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.68 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.49 | ||||||||||||||||||||||||||||||||
| Length | 546 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGDTALSLKC LGGSENQFCS DVSSFTDDGC RLVLGLGPTS TSYCFSVGVN NSNKDSASGF TQADSVLQLG RPAVSIDTFS GLDNGGVIPV VDEGSSSAKR 101: SGGYMPSLLL DPNVKNPSQI QQLKDFGTGI HSQVSQEPSP YTEFYVQQRT SNPRKCKFMG CVKGARGASG LCISHGGGQR CQKPGCNKGA ESKTTFCKTH 201: GGGKRCEHLG CTKSAEGKTD FCISHGGGRR CEFLEGCDKA ARGRSGLCIK HGGGKRCNIE DCTRSAEGQA GLCISHGGGK RCQYFSGCEK GAQGSTNYCK 301: AHGGGKRCIF SGCSKGAEGS TPLCKAHGGG KRCLADGGGI CSKSVHGGTN FCVAHGGGKR CVVVGCTKSA RGRTDSCVKH GGGKRCKIID CEKSAQGSTD 401: FCKAHGGGKR CSWGDGKCEK FARGKSGLCA AHNTIMSREN KDGSKSGLIG PGLFSGLVFG STSDHSQSGA SAVSDCTDSV ERIQFENRQK NKKMMIPMQV 501: LVPSSMKSPS NSHEGETNIY DFMVPEERVH GGGLVMSLLG GSIDRN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)