AT5G06700.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.990 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Plant protein of unknown function (DUF828) | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication). A tbr mutant is impaired in its ability to deposit secondary wall cellulose in specific cell types, most notably in trichomes. | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: plant-type cell wall modification, pectin biosynthetic process, cellulose biosynthetic process, secondary cell wall biogenesis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF828) (TAIR:AT3G12060.1); Has 18773 Blast hits to 6666 proteins in 584 species: Archae - 22; Bacteria - 3086; Metazoa - 4181; Fungi - 2776; Plants - 1414; Viruses - 506; Other Eukaryotes - 6788 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:+:2063638..2065810 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 67928.40 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.12 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.61 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 608 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASDAVKYMP IHGGGTTATT AADIKSFFSA LKPKKTSTFA YAFVITFVSF TLFFAFSPSP NSSSPWFSNI FTSSSTTTTS DNTSGSQFSS IFSYILPNVT 101: STKPTNRSSD ATDSLSVNAT SPPLNSNSKN GTLQTPAPET HTPVAKNTTF ESPIVNGTNP DAKNNTSSHP LLSDKSSTTG SNNQSRTTAD TETVNRNQTT 201: SPAPSKAPVS VDLKTNSSSN SSTASSTPKK QTKTVDLVSS VKQEIEKWSE SLKNCEFFDG EWIKDDSYPL YKPGSCNLID EQFNCITNGR PDKDFQKLKW 301: KPKKCSLPRL NGAILLEMLR GRRLVFVGDS LNRNMWESLV CILKGSVKDE TKVYEARGRH HFRGEAEYSF VFQDYNCTVE FFVSPFLVQE WEIVDKKGTK 401: KETLRLDLVG KSSEQYKGAD VIVFNTGHWW THEKTSKGED YYQEGSNVYH ELAVLEAFRK ALTTWGRWVE KNVNPAKSLV FFRGYSASHF SGGQWNSGGA 501: CDSETEPIKN DTYLTPYPSK MKVLEKVLRG MKTPVTYLNI TRLTDYRKDG HPSVYRKQSL SEKEKKSPLL YQDCSHWCLP GVPDSWNEIL YAELIVKLNQ 601: LSQTQRKT |
||||||||||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)