AT5G01260.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.595 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Carbohydrate-binding-like fold | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Carbohydrate-binding-like fold; FUNCTIONS IN: carbohydrate binding, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Immunoglobulin-like fold (InterPro:IPR013783), Carbohydrate-binding-like fold (InterPro:IPR013784), Glycoside hydrolase, carbohydrate-binding (InterPro:IPR002044); BEST Arabidopsis thaliana protein match is: catalytics;carbohydrate kinases;phosphoglucan, water dikinases (TAIR:AT5G26570.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:105367..106488 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 34181.20 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.14 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.29 | ||||||||||||||||||||||||||||||||||||
| Length | 306 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MIGIGRTLTS SSPSKIILED LPPGIYRYGT EIFTSVPRKT FHHIKFLRLD SAQSSRILKP VPLRSSSIKD SQVNVEDEEI EASNKTVRVR FQLRKECVFG 101: EHFFIVGDDP VFGGLWDPET ALPLNWSDGN VWTVDLDLPV GRLVEFKLLL KAQTGEILWQ PGPNRALETW ETNKTIRICE DWDNADLQMM IEEDFVPYTN 201: ISSIGSEDED EVLGSVQQNS SVVAVENAGY VSDESAQNSS FSIQSEKTME PSNGALTARE VIKEAMFTEE ESPVLVPGLI PLSDLDNEQV EVINEGKAET 301: FPEVIT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)