AT5G01030.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF3527) | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function (DUF3527); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3527 (InterPro:IPR021916); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3527) (TAIR:AT2G37930.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:10638..13003 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 82296.70 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.56 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.70 | ||||||||||||||||||||||||||||||||
| Length | 744 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAEKEGKASG TDNDNRVKTK RSSHSRRKEC VNKSLEHNDE LVKYMSKLPG YLQRIERGEE SVHQSNVLNV GVLDWESLQR WKHGRAKGGE ISGRSERKVS 101: TIATTSTSGV VVPNDSANRC KIDDQVHTCS NLGKVKASRD LQYSLEPQLA SRDSLNKQEI ATCSYKSSGR DHKGVEPRKS RRTHSNREST TGLSSEMGNS 201: AGSLFRDKET QKRAGEIHAK EARERAKECV EKLDGDEKII GDSEAGLTSE KQEFSNIFLL RSRKQSRSTL SGEPQISREV NRSLDFSDGI NSSFGLRSQI 301: PSSCPLSFDL ERDSEDMMLP LGTDLSGKRG GKRHSKTTSR IFDREFPEDE SRKERHPSPS KRFSFSFGRL SRNFSLKDIS AGQPLSSSED TIMSGSMRFD 401: GSVCPSQSSN PENQNTHCRS RVSPLRRFLD PLLKPKASES VLPSKARSSS SNPKPITNSN VPLQDEKKQD ASRTLAIFQL TIRNGIPLFQ FVVDDNSSSS 501: RSILGATMKS SDSSFKDDSV QYCTFYSVNE VKKKKSGSWL IHGHREKHCG FVYNIIGQMQ LGNSMSVDIS EQKSLITESV LFDESEQVKG RKEVAAVVIK 601: KKPVEGSYTS FEETSVIIPG GVHSFPEKGA PSPLISRWRS GGLCDCGGWD VGCKLHVLSN KTVLHKFNQS FTLFDQEVSE QDSSPALAMT ELKTGIYRVE 701: FGSFVSPLQA FFVCVTVLTC ASKAKTTGKS SSPMAPPLSP VGRV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)