AT4G39600.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.859 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Galactose oxidase/kelch repeat superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT5G48990.1); Has 1438 Blast hits to 1405 proteins in 73 species: Archae - 0; Bacteria - 15; Metazoa - 338; Fungi - 0; Plants - 1061; Viruses - 3; Other Eukaryotes - 21 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:18389436..18390539 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 41214.50 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.87 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.20 | ||||||||||||||||||||||||||||||||||||
| Length | 367 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKGKKPSIEI ATSNPSLPED LVVSCLARVS RLYYPTLSLV SKSFRSLIAS PDLYKTRSLL GRTESCLYLC LRYSPEDNPR WFTLCRKPNR RTLSKEKNES 101: SGNLLVPIPI INSPPLEWSS IVAVGSHLYA INGPIEDAPC SNVSFLDCRS HTWLEAPSMR VAHTNSQLDG KMYLAGSSEN VDSLNCIQVF STKTQTWKPV 201: PFQKRIFGVG DLEGKIYTIC RTECGQGVTI KPKDLTCDVV GFCGEKDWSS VCMIGNIVYF YRPNGEFLWI YSGKGESARR NLKGLEGLPK FDDYASVKLV 301: DYGGKLMVLW DTYVPESESK EKMIWCAEIS LQKKCNNEEI WGTVEWFDAV LTVPEDCKFV RAIAATV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)