AT4G39180.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.998 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Sec14p-like phosphatidylinositol transfer family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
encodes a protein that complements the function of a sec14(ts) mutant of S. cerevisiae | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
SECRETION 14 (SEC14); FUNCTIONS IN: phosphatidylinositol transporter activity; INVOLVED IN: phosphatidylcholine biosynthetic process; LOCATED IN: intracellular; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), Cellular retinaldehyde binding/alpha-tocopherol transport (InterPro:IPR001071), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: SEC14-like 3 (TAIR:AT2G21540.3); Has 2899 Blast hits to 2883 proteins in 237 species: Archae - 0; Bacteria - 0; Metazoa - 924; Fungi - 653; Plants - 892; Viruses - 0; Other Eukaryotes - 430 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:18244006..18246673 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 63863.20 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.84 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.59 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 554 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MADTMVAHMD RHNKIDVEIS EDDKRLTKLC SLKKKAINAT NKFKHSMTKK GRRHSRVACV SIVDEIDTEE LQAVDAFRQA LILDELLPSK HDDHHMMLRF 101: LRARKFDLEK AKQMWSDMLN WRKEYGADTI MEDFDFKEIE EVVKYYPQGY HGVDKEGRPI YIERLGQVDA TKLMKVTTID RYVKYHVKEF EKTFNVKFPA 201: CSIAAKRHID QSTTILDVQG VGLSNFNKAA KDLLQSIQKI DNDNYPETLN RMFIINAGCG FRLLWNTVKS FLDPKTTAKI HVLGNKYQTK LLEIIDANEL 301: PEFLGGKCTC ADKGGCMRSD KGPWNDPEIF KLVQNGEGRC LRRSLSGIEE KTIFEYNNET KKKCEPEETH KQSAAEMEKK FIDTNVDAAA AADWPTKLNK 401: AEKNPTDLKD VYSAVNPLER KGYLYGSVMA LLMGIVGVMR LTKNMPRRLT EANVYSREGS AVYQDGVTVM SKQEYIAMVK KITDLEEKCK SMEAQAAFYM 501: EREKTLDAAL RRIDQLELQL SETNKALDET MTRQHEIMAF IEKKKKKKRK FLLF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)