AT4G36945.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : PLC-like phosphodiesterases superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
PLC-like phosphodiesterases superfamily protein; FUNCTIONS IN: phospholipase C activity, phosphoric diester hydrolase activity; INVOLVED IN: intracellular signaling pathway, lipid metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Phospholipase C, phosphatidylinositol-specific , X domain (InterPro:IPR000909), PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946); BEST Arabidopsis thaliana protein match is: PLC-like phosphodiesterases superfamily protein (TAIR:AT3G19310.1); Has 486 Blast hits to 483 proteins in 111 species: Archae - 0; Bacteria - 90; Metazoa - 8; Fungi - 169; Plants - 156; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr4:-:17420098..17422047 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 44333.90 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.76 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.29 | ||||||||||||||||||||||||||||||||
| Length | 408 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MERFNFFNLM IIALCLSSFV HSLEMGETCS STSECDAGLS CQSCPANGNT GSTCTRIQPL NPTSKVNGLP FNKYSWLTTH NSYAITGANS ATGSFLVSPK 101: NQEDSITNQL KNGVRGIMLD TYDFQNDIWL CHSTGGTCFN FTAFQPAINA LKEINDFLES NLSEIVTIIL EDYVKSQMGL TNVFNASGLS KFLLPISRMP 201: KDGTDWPTVD DMVKQNQRLV VFTSKKDKEA SEGLAYQWNY MVENQYGNDG MKDGSCSSRS ESSSLDTMSR SLVFQNYFET SPNSTQACAD NSSPLIEMMR 301: TCHEAAGKRW PNFIAVDFYQ RSDSGGAAEA VDEANGRLTC GCDSLVYCKS NAPFGTCDAP PPKSSPSPVS GGKDTSRKPR NLPAGNADST AIGLSSLVLI 401: SAATLLLW |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)