AT4G36700.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.965 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RmlC-like cupins superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RmlC-like cupins superfamily protein; FUNCTIONS IN: nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: seed; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT2G18540.1); Has 20902 Blast hits to 8035 proteins in 808 species: Archae - 33; Bacteria - 2055; Metazoa - 8096; Fungi - 1786; Plants - 959; Viruses - 431; Other Eukaryotes - 7542 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:17298443..17300337 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 59088.10 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.22 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.41 | ||||||||||||||||||||||||||||||||||||
| Length | 522 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTRFAVLPLS VLLLVLLFLC TESLAKSEES EEYDVAVPSC CGFSSPLLIK KDQWKPIFET KFGQISTVQI GNGCGGMGPY KIHSITLEPN TILLPLLLHS 101: DMVFFVDSGS GILNWVDEEA KSTEIRLGDV YRLRPGSVFY LQSKPVDIFL GTKLKLYAIF SNNDECLHDP CFGAYSSITD LMFGFDETIL QSAFGVPEGI 201: IELMRNRTKP PLIVSETLCT PGVANTWQLQ PRLLKLFAGS ADLVDNKKKK EKKEKKEKVK KAKTFNVFES EPDFESPYGR TITINRKDLK VLKGSMVGVS 301: MVNLTQGSMM GPHWNPWACE ISIVLKGAGM VRVLRSSISS NTSSECKNVR FKVEEGDIFA VPRLHPMAQM SFNNDSLVFV GFTTSAKNNE PQFLAGEDSA 401: LRMLDRQVLA ASLNVSSVTI DGLLGAQKEA VILECHSCAE GEIEKLKVEI ERKKIDDERK RRHDERKKEE EEAKREEEER RKREEEEEKK RWPPQQPPQE 501: EELRERQLPM EKEWEMEGEE ES |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)