AT4G36650.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : plant-specific TFIIB-related protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a protein with similarity to the general transcription factor TFIIB. pBRP binds rDNA sequences in vitro. pBRP has been localized to the outer face of the plastid membrane with GFP fusion however, under conditions of proteosome inhibition it is found in the nucleus. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
plant-specific TFIIB-related protein (PBRP); FUNCTIONS IN: RNA polymerase II transcription factor activity, rDNA binding; INVOLVED IN: translational initiation, regulation of transcription, DNA-dependent, transcription initiation; LOCATED IN: plastid outer membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor TFIIB related (InterPro:IPR000812), Transcription factor TFIIB, cyclin-related (InterPro:IPR013150), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: transcription factor IIB (TAIR:AT2G41630.1); Has 1560 Blast hits to 1559 proteins in 341 species: Archae - 524; Bacteria - 1; Metazoa - 239; Fungi - 259; Plants - 166; Viruses - 3; Other Eukaryotes - 368 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:17283283..17285527 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 55674.80 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.14 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.46 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 503 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKCPYCSSAQ GRCTTTSSGR SITECSSCGR VMEERQTQNH HLFHLRAQDT PLCLVTSDLQ TAAQPSPEDE EDPFEPTGFI TAFSTWSLEP SPIFARSSLS 101: FSGHLAELER TLELASSTSN SNSSTVVVDN LRAYMQIIDV ASILGLDCDI SEHAFQLFRD CCSATCLRNR SVEALATACL VQAIREAQEP RTLQEISIAA 201: NVQQKEIGKY IKILGEALQL SQPINSNSIS VHMPRFCTLL QLNKSAQELA THIGEVVINK CFCTRRNPIS ISAAAIYLAC QLEDKRKTQA EICKITGLTE 301: VTLRKVYKEL LENWDDLLPS NYTPAVPPEK AFPTTTISTT RSTTPRAVDP PEPSFVEKDK PSAKPIETFD HTYQQPKGKE DKQPKFRQPW LFGTASVMNP 401: AEMISEPAKP NAMDYEKQQL DKQQQQQLGD KETLPIYLRD HNPFPSNPSP STGISTINWS FRPSVVPGSS SNLPVIHPPK LPPGYAEIRG SGSRNADNPH 501: GDF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)