AT4G36140.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.761 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : disease resistance protein (TIR-NBS-LRR class), putative | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
disease resistance protein (TIR-NBS-LRR class), putative; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) (TAIR:AT5G45050.1); Has 19842 Blast hits to 11670 proteins in 467 species: Archae - 4; Bacteria - 629; Metazoa - 268; Fungi - 32; Plants - 18688; Viruses - 0; Other Eukaryotes - 221 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:17098956..17104479 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 182797.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.65 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.19 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1607 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MDYSSASLLR ICAAAITILG TVSFLIYEKF IRSNPQKKKK ITASSRNWEH NVFSSFSSVD VPKSFLSRIR KELRRKGFEP LIDNETERCV SIGPELRNAI 0101: SVSRIVIVVL SRNYALSPWC LDELVEIMKC KEELGQRVVT IFYNLDPIDV LKQTGDFGDN FRKTRKGKTD EDIWKCTRAL AELPRVYKLT SRLSIKIDDT 0201: AMNKHREECE RKNKEDIDRW IKALEQVATI DGYRSRDWDD EKAMVKKIAN DISSIMNNST QSSASQGLVG MEAHMEKMKE LLGLDSNKVR LIGICGLPGS 0301: GKTTIAKRLY QQLLPQFELS TIIIDIKGCY PRTCYNEDDR KLQLQSHLLS QLLNHKFTGE ILQLEAAHEM LKDKKVVLVL DDVDSIGQLD ALANEARWFG 0401: PGSRIIITTQ DQRLLEEQGI QYIYNVDFPP PNGLLPTVYI YCEDTLQYSF ASHLSMDFRR KGISAFVNYS ETLDVIERVS ASVLVFSKSC VSSTSCLDML 0501: VRVFQCRRKT GQLVVPVYYG ISSSDVVVQE HKSVDRIREW SSALQELREL PGHHNREECS ESELVEEIVK DVHEKLFPTE QIGINSRLLE MEHLLCKQPW 0601: GVRRIGIWGM PGIGKTTLAK AFFDQISGGY EASCFIKHFD KAFSGKGLHR LLEEHFGKIL KELPRVCSSI TRPSLPRDKL SKKRTLVVLD DVHNPLVAES 0701: FLEGFHWFGP GSLIIITSRD KQVFRLCQIN HVYEVQSFNE NEALQLFSQC AFRRDINEQN LLELSLKVID YASGNPLALS FYCRVLKGKE LSEMETTFFK 0801: LKQRTPYKIF DLFKSSYETL DDNEKNIFLD IACFFSGENV DYVMRLLEGC GFFPHVGIDV LVENCLVTIS ENRVKMHRII QDFGREIIDG ETVQIERRRR 0901: LSDPWSIKFL LEDDELEANE DPKATYTRTL GTEDIEGILL DTSNLTFDVK PGAFENMLSL RFLKIYCSSY ENHYSLRLPK GLKFLPDELR LLHWENYPLQ 1001: SLPQDFDPCH LVELNLSYSQ LQKLWAGTKS LEMLKVVKLC HSQQLTAIDD ILKAQNIELI DLQGCRKLQR FPATGQLQHL RVVNLSGCRE IKSFPEVSPN 1101: IEELHLQGTG IRELPISIVS LFEQAKLNRE LFNLLPEFSG VSNAWNNEQS TSLAKLVTST QNLGKLVCLN MKDCVHLRKL PYMVDFESLK VLNLSGCSDL 1201: DDIEGFPPNL KELYLVSTAL KELPQLPQSL EVLNAHGCVS LLSIPSNFER LPRYYTFSNC FALSASVVNE FVKNALTNVA HIAREKQELN KSLALNFTVP 1301: SPESKNITFD LQPGSSVIIQ LGSSWRLIRG FAILVEVAFL EEYQAGAFSI SCVCRWKDTE CVSHRLEKNF HCWIPGEGVP KDHMFVFCDF DMHLTACEGN 1401: DSSILADLVV FEFFTVNKQK KLLDGSCAVT RCGVHVFTAA NEDTSSSMTK PFSSSGYLQE IFDNEVEELR VIYDGLDEND RNLLLYMAYL NGEEADFLAP 1501: LIASTGLGIS SRLNVLANKS LINISPYGII VRQGLLKKIG REIVYRSVYL SSLNDTLPGS STVSLRLAAV KEPKVTTFKV PRVRSVKQDE FNAKINAFIS 1601: RFKQKPQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)