AT4G34250.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.697 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : 3-ketoacyl-CoA synthase 16 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes KCS16, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
3-ketoacyl-CoA synthase 16 (KCS16); FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity; INVOLVED IN: fatty acid elongation, response to light stimulus, very long-chain fatty acid metabolic process, response to osmotic stress; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039), Very-long-chain 3-ketoacyl-CoA synthase (InterPro:IPR012392), 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal (InterPro:IPR013747), FAE1/Type III polyketide synthase-like protein (InterPro:IPR013601), Thiolase-like, subgroup (InterPro:IPR016038); BEST Arabidopsis thaliana protein match is: 3-ketoacyl-CoA synthase 8 (TAIR:AT2G15090.1); Has 4922 Blast hits to 4907 proteins in 1227 species: Archae - 0; Bacteria - 1689; Metazoa - 0; Fungi - 21; Plants - 3079; Viruses - 0; Other Eukaryotes - 133 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:16394749..16396230 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 55780.90 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.08 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.07 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 493 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDYPMKKVKI FFNYLMAHRF KLCFLPLMVA IAVEASRLST QDLQNFYLYL QNNHTSLTMF FLYLALGSTL YLMTRPKPVY LVDFSCYLPP SHLKASTQRI 101: MQHVRLVREA GAWKQESDYL MDFCEKILER SGLGQETYVP EGLQTLPLQQ NLAVSRIETE EVIIGAVDNL FRNTGISPSD IGILVVNSST FNPTPSLSSI 201: LVNKFKLRDN IKSLNLGGMG CSAGVIAIDA AKSLLQVHRN TYALVVSTEN ITQNLYMGNN KSMLVTNCLF RIGGAAILLS NRSIDRKRAK YELVHTVRVH 301: TGADDRSYEC ATQEEDEDGI VGVSLSKNLP MVAARTLKIN IATLGPLVLP ISEKFHFFVR FVKKKFLNPK LKHYIPDFKL AFEHFCIHAG GRALIDEMEK 401: NLHLTPLDVE ASRMTLHRFG NTSSSSIWYE LAYTEAKGRM TKGDRIWQIA LGSGFKCNSS VWVALRNVKP STNNPWEQCL HKYPVEIDID LKE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)