AT4G31570.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24460.1); Has 194354 Blast hits to 66887 proteins in 3244 species: Archae - 3688; Bacteria - 38556; Metazoa - 84828; Fungi - 17265; Plants - 10589; Viruses - 805; Other Eukaryotes - 38623 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:15297061..15306036 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 305931.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 4.42 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.56 | ||||||||||||||||||||||||||||
| Length | 2730 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MDKKKNRADP LAAGRQKLQQ FRQKKADKGT DQKKDSKGST SQGKSSKKSN KSEKHERKPD TSAVSDEAQA PSPVTVGGAT SHVNVAEEVV DSPQTSSDTK 0101: AHEYVSVHGS SSEPDALQPG HTTSNDGSEA RKEVVNSEND ISKSLSTEEE NVKSINSGVA GTVDSLISDP ADSEKGVTHD DASNVDGIFA ASGNIAEGEG 0201: VEVEGGSGNV EKPHQPSSLQ EYIPDVSLIR ARGDQVTDVG EMQEEDMEQF SELSAKAGVD KIATEERQTS YPAVVDSSAS PSHFSEGSSV AFDTVELEGI 0301: NGNFRSQQIR EAAELNEEKP ETSIDFPNNR DHVLSAEPEE SSVAEMASQL QLPESVSISG VLSHEETRKI DTLNLSAELT SAHVHEGRSV SFLQLMDIVK 0401: GLGQDEYQIL CNAREAASST EPGTSSLERL REELFVSSTM EDILHVQLTE QSHLQIEFDH QHNQFVAEIS QLRASYSAVT ERNDSLAEEL SECQSKLYAA 0501: TSSNTNLENQ LLATEAQVED FTAKMNELQL SLEKSLLDLS ETKEKFINLQ VENDTLVAVI SSMNDEKKEL IEEKESKNYE IKHLSSELCN CKNLAAILKA 0601: EVEQFENTIG PLTDEKIHLV EEKYSLLGEA EKLQEELANC KTVVTLQEVE NSNMKETLSL LTRQQTMFEE NNIHLREENE KAHLELSAHL ISETYLLSEY 0701: SNLKEGYTLL NNKLLKFQGE KEHLVEENDK LTQELLTLQE HMSTVEEERT HLEVELREAI ARLDKLAEEN TSLTSSIMVE KARMVDNGSA DVSGLINQEI 0801: SEKLGRSSEI GVSKQSASFL ENTQYTNLEE VREYTSEFSA LMKNLEKGEK MVQNLEEAIK QILTDSSVSK SSDKGATPAV SKLIQAFESK RKPEEPESEN 0901: AQLTDDLSEA DQFVSVNVQI RNLRGLLDQL LLNARKAGIQ FNQLNDDRTS TNQRLEELNV EFASHQDHIN VLEADTIESK VSFEALKHYS YELQHKNHDL 1001: ELLCDSLKLR NDNISVENTE LNKKLNYCSL RIDELEIQLE NLQQNLTSFL STMEEQLVAL QDESERAMMV EHELTSLMSE FGEAVVRLDD CLLRSGTSGA 1101: HTGLDMTKRI SGSVDVAVNV IEDLKEKLEA AYVKHESTSN KYEELKQSFN TLFEKNEFTA SSMQKVYADL TKLITESCGS AEMTSLEVEN VAVFDPFRDG 1201: SFENLLEAVR KILSERLELQ SVIDKLQSDL SSKSNDMEEM TQRSLDSTSL RELVEKVEGL LELESGVIFE SPSSQVEFLV SQLVQKFIEI EELANLLRKQ 1301: LEAKGNELME IEESLLHHKT KIAGLRESLT QAEESLVAVR SELQDKSNEL EQSEQRLLST REKLSIAVTK GKGLIVQRDN VKQSLAEASA KLQKCSEELN 1401: SKDARLVEVE KKLKTYIEAG ERVEALESEL SYIRNSATAL RESFLLKDSL LHRIEEILED LDLPEHFHAR DILEKVEWLA RSANGNSSRP SGWDQKSSDG 1501: GAGFVLSEPW REDVQTGTSS EDDLRIKFEE LKGKFYGLAE QNEMLEQSLM ERNTLVQRWE KLLENIDIPP QLHSMEVENK IEWLASTITE ATHDRDNLQQ 1601: KIDNLEVYCQ SVTTDLEVSQ KQVGDVEGNL QSCVSERVNL SERLESLIGD HESLSARGIH LEVENEKLQN QVKDLHEKLV EKLGNEEHFQ TIEGDLLSLR 1701: YMIDDVIQED GLQDLALASN SENLDGVLRK LIDYYKNLVK SSLPGETDDN VCETRPSDAD VRSGESLGAH GATSHGQHFE LSDSNVVEAT SRDIAVVETP 1801: DVASLTKDLD QALHVQKLTR EERDLYMAKQ QSLVAENEAL DKKIIELQEF LKQEEQKSAS VREKLNVAVR KGKALVQQRD SLKQTIEEVN AELGRLKSEI 1901: IKRDEKLLEN EKKFRELESY SVRVESLESE CQLLKIHSQE TEYLLQERSG NLSMTLNALN SIDIGDEGDI NDPVMKLQRI SQLFQTMSTT VTSAEQESRK 2001: SRRAAELLLA ELNEVQETND SLQEDLSKFT YEIQQLSREK DAAEAAKVEA ISRFENLSAV SNEEKNKLYA QLLSCGTSVN SLRKILAGTN SCLADIFIMD 2101: MEFLHHLKAN MELCAKKTGT DLSGLPQLST ENLVDKEIFA RLSAAWSNIN LHETSSGGNI AEICGSLSQN LDQFVVGVSH LEEKVSKHLA TWHDQINIVS 2201: NSIDTFFKSI GTGTDSEVAA LGERIALLHG ACSSVLVEIE RRKAELVGND DFNMSLHQVD EDFSSMESVR SMVNRLSSAV KELVVANAET LERNEKEMKV 2301: IIANLQRELH EKDIQNNRTC NELVGQVKEA QAGAKIFAED LQSASARMRD MQDQLGILVR ERDSMKERVK ELLAGQASHS ELQEKVTSLS DLLAAKDLEI 2401: EALMQALDEE ESQMEDLKLR VTELEQEVQQ KNLDLQKAEA SRGKISKKLS ITVDKFDELH HLSENLLAEI EKLQQQVQDR DTEVSFLRQE VTRCTNEALA 2501: ASQMGTKRDS EEIQTVLSWF DTIASLLGIE DSLSTDADSH INHYMETFEK RIASMLSEID ELRLVGQSKD VLLEGERSRV AELRQKEATL EKFLLEKESQ 2601: QDISTSSTSE IVEVEPLINK WTKTSIPSQV RSLRKGNMDQ VAISIDADQT DQSGSLEEDD DKDHSLRQES FLDSQDPSLT WSMVYGQTLF IHGSRSVVSC 2701: DRTLMRQPAL RLGIMLYWAI LHALLAAFVV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)