AT4G29150.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : IQ-domain 25 | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
IQ-domain 25 (IQD25); CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 26 (TAIR:AT3G16490.1); Has 784 Blast hits to 779 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 25; Fungi - 2; Plants - 731; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr4:+:14378770..14380340 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 43343.70 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 11.50 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.55 | ||||||||||||||||||||||||||||||||||||
| Length | 399 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRKNLTKLTR VKRETKMGRA TRWFKGLFGI KPSSCSGTDS GTISNRLDRS LCDSYETIPP NISEKEAAWL RSFYAAGEEE KERRTHAIAV AAATAAAADA 101: AVAAAKAAAA VVRLQGQGKS GPLGGGKSRE HRAAMQIQCA FRGYLARKAL RALRGVVKIQ ALVRGFLVRN QAAATLRSME ALVRAQKTVK IQRALRRNGN 201: AAPARKSTER FSGSLENRNN GEETAKIVEV DTGTRPGTYR IRAPVLSGSD FLDNPFRRTL SSPLSGRVPP RLSMPKPEWE ECSSKFPTAQ STPRFSGGSP 301: ARSVCCSGGG VEAEVDTEAD ANRFCFLSGE FNSGYMADTT SFRAKLRSHS APRQRPESNA SAGGWRRSIG GGGVRMQRQS CSGVREAVVG NIERRRMRW |
||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)