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AT4G28540.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : casein kinase I-like 6
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
casein kinase I-like 6 (CKL6); FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasmodesma; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: dual specificity kinase 1 (TAIR:AT1G03930.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G28540-MONOMEReggNOG:ENOG410XPGPeggNOG:KOG1164EMBL:AY099715
EMBL:AY943845EMBL:BT000286EMBL:CP002687EnsemblPlants:AT4G28540
EnsemblPlants:AT4G28540.1entrez:828972GeneID:828972GO:GO:0004674
GO:GO:0005524GO:GO:0005856GO:GO:0009506GO:GO:0016055
GO:GO:0018105GO:GO:0046777GO:GO:0055028Gramene:AT4G28540.1
hmmpanther:PTHR11909hmmpanther:PTHR11909:SF179HOGENOM:HOG000182055InterPro:IPR000719
InterPro:IPR008271InterPro:IPR011009InterPro:IPR017441KEGG:ath:AT4G28540
KO:K00924OMA:HSSTHERPfam:PF00069Pfscan:PS50011
PhylomeDB:Q8LPJ1PROSITE:PS00107PROSITE:PS00108PROSITE:PS50011
Proteomes:UP000006548RefSeq:NP_567812.1scanprosite:PS00107scanprosite:PS00108
SMART:SM00220SMR:Q8LPJ1STRING:3702.AT4G28540.1SUPFAM:SSF56112
TAIR:AT4G28540tair10-symbols:CKL6tair10-symbols:PAPK1UniGene:At.22819
UniProt:Q8LPJ1
Coordinates (TAIR10) chr4:+:14107284..14110511
Molecular Weight (calculated) 54028.40 Da
IEP (calculated) 10.46
GRAVY (calculated) -0.62
Length 479 amino acids
Sequence (TAIR10)
(BLAST)
001: MDLKMDNVIG GKFKLGRKIG GGSFGELFLA VSLQTGEEAA VKLEPAKTKH PQLHYESKIY MLLQGGSGIP SLKWFGVQGD YNAMVIDLLG PSLEDLFNYC
101: NRRLTLKAVL MLADQLISRV EYMHSRGFLH RDIKPDNFLM GLGRKANQVY IIDFGLAKKY RDLQTHRHIP YRENKNLTGT ARYASVNTHL GVEQSRRDDL
201: ESLGYVLMYF LRGSLPWQGL KAGTKKQKYD RISEKKVSTP IEVLCKSYPP EFVSYFQYCR SLRFEDKPDY SYLKRLFRDL FIREGYQFDY VFDWTALKHP
301: QSSARSHSST HERHRTGKPG MGAGPSAEKP ERISVGNIRD KFSGAVEAFA RRNVRGPSPH QNHTRHRTLD EIPSMKPAVN MVSEKGRNTS RYGSASRRAV
401: ASGSRPSSSG EQRESRDSSR VASSGGGVRP SVFQRTQAAA AVSGYESKTA SAFNRDRVAA SRTARDEALR SFELLSIRK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)