AT4G27790.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.539 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Calcium-binding EF hand family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Calcium-binding EF hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048); BEST Arabidopsis thaliana protein match is: Calcium-binding EF hand family protein (TAIR:AT5G08580.1); Has 4096 Blast hits to 3931 proteins in 669 species: Archae - 0; Bacteria - 5; Metazoa - 1396; Fungi - 738; Plants - 1509; Viruses - 0; Other Eukaryotes - 448 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:13850066..13851488 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 40915.10 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.47 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.80 | ||||||||||||||||||||||||||||||||||||||||
| Length | 345 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAKVVVYTIL TATIIFLILL AHKKQNQTQS IEGLITRRIG RRLEMPVFDP LVTRIERLSH EKEAGTKTVE AAKEEKDDMF EEYFAQERRL NTTMRIKFLF 101: PLLDASPRDG FVSLKELQTW MMQQTEDNMV YRTAKELELQ DKDKDGVITF EEYLPQFSKQ DIEKNEKGHG EAGWWMEQFK NSDFDHNGSL DIEEFNNFLH 201: PEDSRNGDTQ RWVLKERMTG MDTNGDGKLE YKEFVKNAYE MYKEFAKFEK EEDENVPTPQ LLFAEMDRDK DRFLVADELR PILQYLQPGE MSYAKFYSTF 301: LCHEADEDKD GKLSLEEMLH HEDVFYKAVH HEDLDDEDYF DHDEL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)