AT4G25835.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.690 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G57480.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:13136117..13137637 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 57618.30 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.99 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.41 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 506 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKEYWTSLAS LLGVLAFCQS LMNSVFPPEL RFAISKLFNK FFKLFSTFCY FDITEIDGVN TNELYNAVQL YLSSSVSIAG NRLSLTRAVN SSSVTFGLSN 101: NDSIVDTFNS VTVVWEHIVT QRQTQTFAWR PMPEEKRGFT LRIKKKDKNL ILDSYLDYIM EKANEIRRLN QDRLLYTNSR GGSLDSRGLP WESVPFKHPS 201: TFDTLAMDPV KKQQIMEDLK DFAECQSFYE RTGRAWKRGY LLYGPPGTGK SSMIAAMANY LRYDIYDLEL TEVKSNSELR KLLMKTSSKS IIVIEDIDCS 301: INLTNRNKKQ STGSYNEPEM LTGSGLGDDL GDGNTITLSG LLNFTDGLWS CCGSERIFVF TTNHIEKLDP ALLRSGRMDM HIHMSYCTFS SVKILLRNYL 401: GFEEGDLNDV VLKELAEVVD RAEITPADVS EALIKNRRDK ERAVRELLVD LRSRVERNEK NGKSRVQNVS LEEQENRAFD SLYAEENGGE EEEIEDNICK 501: SSDDCS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)