AT4G24610.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65440.1); Has 820 Blast hits to 264 proteins in 74 species: Archae - 0; Bacteria - 15; Metazoa - 77; Fungi - 83; Plants - 96; Viruses - 0; Other Eukaryotes - 549 (source: NCBI BLink). | ||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:12700837..12707899 | ||||||||||||||||||||
| Molecular Weight (calculated) | 129003.00 Da | ||||||||||||||||||||
| IEP (calculated) | 6.31 | ||||||||||||||||||||
| GRAVY (calculated) | -0.37 | ||||||||||||||||||||
| Length | 1150 amino acids | ||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MIPNGELRLP ALKVREDRVS PSAPIPVTRT LVADTDVTSD DDMSTNSEDV SLDSSPENSR VSSAVGRSYG RNSSYYTYSE VSSSRETLVG AREQTGPRFD 0101: GDTEEDESTD SASSTQFSPP PAAGRINDGV SQVEQTHFPK TDRRATVEKE FDETFSSEEV SDIPSAPPFS GAAEESEEIK PATSSVQVSE VKTGDCVESR 0201: KTGHFTRPSA ASESSGPPDQ HPARLPTFHA SSRGPWHAVV SYDACVRLCL HAWSTGCMEA PMFLENECAL LREAFGLQQL LLQSEEELLA KRSSQAPHEG 0301: VAPKPKKNIG KMKVQVRRVK TVMDGPTGCS ISSLKPSLIK FEKIRIHFSN MSTRLFSGWR ALRKIHVRVP ANGSSLPRQS LAYVHASTQY LKQVSGLLKT 0401: GVTSLRNNST SYDIVQETYS CKLRLKSLAE DNAIMMQPGS GESHVFFPDS HGDDLIVEIL DPMGKDFGRV LVQLANISED SAEKLRWWSV FREPEHQHVG 0501: KLQLYIDYSA SFDDNSHLKC ASVAETVAYD LVLEVALKMQ RFQQRNLLLY GSWKWLLEEF ATYYGISDVY TKLRYLSYVM DVATPTSDCL HLVHDLLTPV 0601: IMKGNGKSAL SHQENRILNE IKDQIEQILK LVFENYKSLD ESSFSGMIDV VNSASGVPAP ALIPAVKLYT LLHDVLSPED QTHLCHYFQA AAKKRSRRHM 0701: GETDEFVANN SEPNFWDMSA MSAAYQKMTM ACKNVKNEIY TDIEIQNEDI LPSFLDLPNL SASIYSTDLC NRLRAFLVAC PPSGPSPTVA ELVIATADFQ 0801: RDLSSWNISP IQGGVDAKEL FHLYIMIWIQ DKRLSLLESC KLDKVKWSGV RTQHSTTPFV DEMYKRLNET IQDYQVIISR WPEYIFVLES AIADVEKATV 0901: EALEKQYADV LSPLKENLAP KKLSFKYVQK LTKRSVIPYV VPDELGILLN SMKRMLDVLR PNIEAKFKAW SSCIPDGGNA APGDRLSEVT VMLRAKFRSY 1001: LQAVVEKLVE NSKLQKTTML KKILQDSKES VGESDIRSKM NNLKEQLTNT VNHLHSVCET HVFIALSRGY WDRMGQIVLS FLENRKENRA WYKGSRVAVS 1101: ILDDTFAAQM QQLLGNSLRE QDLEPPRSIM EVRSILCKDP ADNKAKSFYY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)