AT4G19510.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.716 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Disease resistance protein (TIR-NBS-LRR class) | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Disease resistance protein (TIR-NBS-LRR class); FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G12010.1); Has 24495 Blast hits to 16844 proteins in 780 species: Archae - 22; Bacteria - 1657; Metazoa - 3405; Fungi - 143; Plants - 18330; Viruses - 4; Other Eukaryotes - 934 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:10633685..10637841 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 138743.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.98 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.32 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1210 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MKKTRGSFLE CSAPQSFLSI QYTCRRDFPQ VDLCNHRPPL MAFASSSSSI VLSKCEFDVF VSFRGADTRH DFTSHLVKYL RGKGIDVFSD AKLRGGEYIS 0101: LLFDRIEQSK MSIVVFSEDY ANSWWCLEEV GKIMQRRKEF NHGVLPIFYK VSKSDVSNQT GSFEAVFQSP TKIFNGDEQK IEELKVALKT ASNIRGFVYP 0201: ENSSEPDFLD EIVKNTFRML NELSPCVIPD DLPGIESRSK ELEKLLMFDN DECVRVVGVL GMTGIGKTTV ADIVYKQNFQ RFDGYEFLED IEDNSKRYGL 0301: PYLYQKLLHK LLDGENVDVR AQGRPENFLR NKKLFIVLDN VTEEKQIEYL IGKKNVYRQG SRIVIITRDK KLLQKNADAT YVVPRLNDRE AMELFCLQVF 0401: GNHYPTEEFV DLSNDFVCYA KGLPLALKLL GKGLLTHDIN YWKKKLEFLQ VNPDKELQKE LKSSYKALDD DQKSVFLDIA CFFRIEMHDL LHAMGKEIGK 0501: EKSIRKAGER RRLWNHKDIR DILEHNTGTE CVRGIFLNMS EVRRIKLFPA AFTMLSKLKF LKFHSSHCSQ WCDNDHIFQC SKVPDHFPDE LVYLHWQGYP 0601: YDCLPSDFDP KELVDLSLRY SHIKQLWEDE KNTESLRWVD LGQSKDLLNL SGLSRAKNLE RLDLEGCTSL DLLGSVKQMN ELIYLNLRDC TSLESLPKGF 0701: KIKSLKTLIL SGCLKLKDFH IISESIESLH LEGTAIERVV EHIESLHSLI LLNLKNCEKL KYLPNDLYKL KSLQELVLSG CSALESLPPI KEKMECLEIL 0801: LMDGTSIKQT PEMSCLSNLK ICSFCRPVID DSTGLVVLPF SGNSFLSDLY LTNCNIDKLP DKFSSLRSLR CLCLSRNNIE TLPESIEKLY SLLLLDLKHC 0901: CRLKSLPLLP SNLQYLDAHG CGSLENVSKP LTIPLVTERM HTTFIFTDCF KLNQAEKEDI VAQAQLKSQL LARTSRHHNH KGLLLDPLVA VCFPGHDIPS 1001: WFSHQKMGSL IETDLLPHWC NSKFIGASLC VVVTFKDHEG HHANRLSVRC KSKFKSQNGQ FISFSFCLGG WNESCGSSCH EPRKLGSDHV FISYNNCNVP 1101: VFKWSEETNE GNRCHPTSAS FEFYLTDETE RKLECCEILR CGMNFLYARD ENDRKFQGIR VTDTVERTSS EALVTIRGQS HSRIEERRYG RIRDEIMDMT 1201: GSSMIGGPES |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)